AdrianSeguraOrtiz / GENECILinks
Software package whose main functionality consists of an evolutionary algorithm to determine the optimal ensemble of machine learning techniques for genetic network inference based on the confidence levels and topological characteristics of its results.
☆26Updated last week
Alternatives and similar repositories for GENECI
Users that are interested in GENECI are comparing it to the libraries listed below
Sorting:
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 7 months ago
- ☆18Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆33Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆42Updated last week
- ☆11Updated 8 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆27Updated 7 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated last week
- Computational Optimization of DNA Activity (CODA)☆60Updated 3 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆88Updated 4 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆17Updated 4 months ago
- ☆25Updated last month
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- Explainable AI for Bioinformatics☆123Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 3 months ago
- ☆62Updated 3 weeks ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆100Updated this week
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 9 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- ☆12Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆26Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆83Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆34Updated 4 months ago