AdrianSeguraOrtiz / GENECILinks
Software package whose main functionality consists of an evolutionary algorithm to determine the optimal ensemble of machine learning techniques for genetic network inference based on the confidence levels and topological characteristics of its results.
☆35Updated this week
Alternatives and similar repositories for GENECI
Users that are interested in GENECI are comparing it to the libraries listed below
Sorting:
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 10 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆69Updated 2 years ago
- ☆11Updated 11 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- ☆34Updated 2 years ago
- Automated Explainable AI for Omics☆29Updated last month
- Interactive tutorials for using scikit-bio in biological research☆28Updated 2 months ago
- ☆67Updated 7 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- ☆79Updated 3 months ago
- Explainable AI for Bioinformatics☆125Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 4 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- Deep representation learning for disease prediction based on microbiome data☆60Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 11 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆37Updated 7 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- ☆18Updated last year
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆108Updated last month
- ☆34Updated 2 years ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆27Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- ☆25Updated 4 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆54Updated last week
- A tool for visualising kmers in 2D space.☆11Updated 7 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated 2 years ago