Alternatives and similar repositories for DeePathNet

Users that are interested in DeePathNet are comparing it to the libraries listed below

• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆127Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆77Updated 10 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆88Updated 3 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆123Updated 4 months ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆90Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 8 months ago
• itmoon7 / onconpc
  Clinical sequencing-based primary site classifier
  ☆38Updated last year
• zou-group / CellVoyager
  ☆100Updated 4 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆125Updated this week
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆32Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 9 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆150Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆52Updated 5 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆98Updated 2 months ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆109Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated this week
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆106Updated 2 years ago
• bjornwallner / ML_medbioinfo
  Machine Learning in Medical Bioinformatics
  ☆25Updated 8 months ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆31Updated 3 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆156Updated this week
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆111Updated 3 years ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆165Updated 4 years ago
• Genentech / SpatialAgent
  ☆134Updated 9 months ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• evanpeikon / functional_enrichment_analysis
  A DIY guide to gene ontology, pathway, and gene set enrichment analysis
  ☆26Updated last year