Alternatives and similar repositories for DeePathNet

Users that are interested in DeePathNet are comparing it to the libraries listed below

• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆125Updated 2 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 4 months ago
• mit6874 / mit6874.github.io
  ☆51Updated 4 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 6 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆84Updated 10 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆123Updated last week
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆61Updated 5 months ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆77Updated last week
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆29Updated 10 months ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆105Updated 2 years ago
• bjornwallner / ML_medbioinfo
  Machine Learning in Medical Bioinformatics
  ☆25Updated 5 months ago
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆37Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated last month
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated last week
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆80Updated 3 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆96Updated last year
• TencentAILabHealthcare / scTranslator
  ☆37Updated last month
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated 5 months ago
• lulab / Pathformer
  Pathformer: biological pathway informed transformer model
  ☆33Updated last year
• itmoon7 / onconpc
  Clinical sequencing-based primary site classifier
  ☆34Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆29Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆69Updated this week
• zou-group / CellVoyager
  ☆86Updated last week
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆84Updated 3 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated 2 months ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆26Updated 6 years ago
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆106Updated last week