Alternatives and similar repositories for root_painter:

Users that are interested in root_painter are comparing it to the libraries listed below

• talmolab / sleap-roots
  Analysis tools for SLEAP-based plant root phenotyping.
  ☆11Updated this week
• predictivephenomics / RhizoVisionExplorer
  Application to extract features from plant root images
  ☆16Updated 3 years ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆109Updated this week
• robail-yasrab / RootNav-2.0
  Plant Phenotyping APP
  ☆44Updated 4 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 2 years ago
• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆13Updated last year
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 6 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated last year
• Abe404 / segmentation_of_roots_in_soil_with_unet
  Code for the paper "Segmentation of Roots in Soil with U-Net"
  ☆16Updated 2 months ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆108Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 5 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆137Updated this week
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆39Updated last month
• TissUUmaps / TissUUmapsCore
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆22Updated 2 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆55Updated 3 weeks ago
• michaellee1 / CellSeg
  ☆22Updated last year
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆132Updated 3 weeks ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆147Updated this week
• BaroudLab / Griottes
  Python program to generate NetworkX graphs from segmented images.
  ☆15Updated last year
• yapic / yapic
  Yet Another Pixel Classifier (based on deep learning)
  ☆35Updated 8 months ago
• biocompibens / pySpacell
  A Python package for single-cell spatial image analysis.
  ☆18Updated last year
• wtwtwt0330 / SegRoot
  Source code for SegRoot
  ☆18Updated 5 years ago
• robmarkcole / streamlit-segmentation-app
  streamlit app for binary segmentation
  ☆18Updated 2 years ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆42Updated this week
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆24Updated this week
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated 2 months ago
• Gregor-Mendel-Institute / aradeepopsis
  A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
  ☆41Updated 2 years ago