Abe404 / root_painterLinks
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
☆67Updated 3 weeks ago
Alternatives and similar repositories for root_painter
Users that are interested in root_painter are comparing it to the libraries listed below
Sorting:
- Plant Phenotyping APP☆46Updated 8 months ago
- Application to extract features from plant root images☆20Updated 3 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆11Updated this week
- Source code for SegRoot☆18Updated 5 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆111Updated last week
- Easy Plant Phenotyping Tool for both indoor and outdoor use.☆11Updated 5 years ago
- Code for the paper "Segmentation of Roots in Soil with U-Net"☆16Updated 5 months ago
- Yet Another Pixel Classifier (based on deep learning)☆35Updated last year
- A minimal Zarr image viewer based on Viv.☆153Updated 3 weeks ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- Open source Python library for building bioimage analysis pipelines☆175Updated this week
- Modular, object-based analysis for ImageJ/Fiji☆14Updated this week
- scivision: a framework for scientific image analysis☆100Updated this week
- Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping☆38Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated 2 weeks ago
- serve Zarr datasets via HTTP☆28Updated 2 years ago
- streamlit app for binary segmentation☆19Updated 2 years ago
- Tiktorch☆12Updated 2 months ago
- Machine-learning-based morphometrics☆34Updated 4 years ago
- GPU-accelerated Image Processing library for Python☆46Updated last week
- Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.☆25Updated last year
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆42Updated last month
- Segment Anything Model API☆94Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- ☆50Updated 11 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 9 months ago
- ☆31Updated 3 years ago
- Your Personal Assistant in Computational Bioimaging.☆42Updated 2 months ago
- A collection of resources on bioimage analysis and related tools and techniques☆13Updated 2 years ago