Abe404 / root_painterLinks
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
☆68Updated 3 months ago
Alternatives and similar repositories for root_painter
Users that are interested in root_painter are comparing it to the libraries listed below
Sorting:
- Plant Phenotyping APP☆45Updated 11 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated this week
- Open source Python library for building bioimage analysis pipelines☆182Updated this week
- Analysis tools for SLEAP-based plant root phenotyping.☆13Updated 3 months ago
- A python based GUI to annotate images and save annotations as COCO style JSON format.☆222Updated last week
- Yet Another Pixel Classifier (based on deep learning)☆36Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- A Python package for single-cell spatial image analysis.☆18Updated 2 years ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆121Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- Tiktorch☆12Updated 2 months ago
- Application to extract features from plant root images☆23Updated 4 years ago
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Updated 3 months ago
- ☆23Updated 2 years ago
- Modular, object-based analysis for ImageJ/Fiji☆16Updated this week
- Segment Anything Model API☆100Updated last year
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆126Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- streamlit app for binary segmentation☆19Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆140Updated 2 weeks ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Your Personal Assistant in Computational Bioimaging.☆44Updated 6 months ago
- Deep learning based spot detection for FISH images.☆24Updated last month