RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
☆76Apr 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for root_painter
Users that are interested in root_painter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper "Segmentation of Roots in Soil with U-Net"☆16Jan 10, 2025Updated last year
- RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy☆24Jun 5, 2024Updated last year
- Analysis tools for SLEAP-based plant root phenotyping.☆13Apr 24, 2026Updated last week
- Application to extract features from plant root images☆28Oct 21, 2025Updated 6 months ago
- Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.☆26Oct 29, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NWB extension to store pose estimation data☆17Feb 27, 2026Updated 2 months ago
- Tools for machine learning of animal behavior☆15Mar 8, 2024Updated 2 years ago
- ☆11May 20, 2025Updated 11 months ago
- The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colo…☆26Nov 3, 2023Updated 2 years ago
- ☆34Jan 17, 2022Updated 4 years ago
- ☆88Mar 23, 2026Updated last month
- Tools for extracting crevasse location and volume from high-resolution digital elevation models, following Chudley et al. (2025).☆12Apr 23, 2026Updated last week
- This is a repository for draft versions of a book called Meta-Analysis of Ecological Data in R (MaEDR)☆12Jul 28, 2022Updated 3 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆33Mar 21, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A PyTorch implementation of the Exclusive Cross Entropy Loss.☆20Aug 12, 2022Updated 3 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- ☆24Mar 31, 2021Updated 5 years ago
- Python version of the FMask Landsat Cloud Masking code☆13Apr 3, 2016Updated 10 years ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- This is an R package for element cycle analysis using metagenomic data.☆44Feb 2, 2026Updated 3 months ago
- R script suite for use in conjunction with Biomod2 R package for ecological niche ensemble modeling, adding a report generation feature w…☆12Oct 1, 2020Updated 5 years ago
- ☆13Aug 12, 2022Updated 3 years ago
- A classification framework to enhance your habitat distribution models☆36Nov 24, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 2 years ago
- Deployment (and development) environment for the DURAARK system.☆22Mar 9, 2016Updated 10 years ago
- Plotting pytorch tensors made easy!☆15Jan 28, 2021Updated 5 years ago
- 依据广西81个县早稻、晚稻作物4年产量的相关历史数据,结合4年气象降雨、温度、光照、温差等气象数据,一方面探索广西各地区气象环境局部特征,构建未来气象预测系统,另一方面挖掘气象和水稻产量的关系,构建因地制宜精准产量预测模型。☆15Sep 8, 2019Updated 6 years ago
- Code for the CVPPA 2021 paper: Semi-supervised dry herbage mass estimation using automatic data and synthetic images☆13Dec 19, 2022Updated 3 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 2 months ago
- Foundation models & LLMs☆66Aug 2, 2025Updated 9 months ago
- deck for jsconf2015 talk, "if you wish to learn e6/2015 from scratch, you must first invent the universe"☆42Jun 1, 2015Updated 10 years ago
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Algorithms to derive a land surface phenology product from PlanetScope imagery for AmeriFlux and NEON sites☆17Mar 3, 2024Updated 2 years ago
- ICEpy4D is a multi-purpose Python package for 4D Image-based Continuos monitoring of glaciers' Evolution with deep learning SfM and low-c…☆25Mar 19, 2026Updated last month
- ☆15Mar 6, 2025Updated last year
- Tutorial for performing redundancy analysis☆16Oct 21, 2020Updated 5 years ago
- A simple Rust library to retrieve data from https://api.carbonintensity.org.uk/☆11Apr 25, 2026Updated last week
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12May 30, 2022Updated 3 years ago