Abe404 / root_painter
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
☆67Updated this week
Alternatives and similar repositories for root_painter
Users that are interested in root_painter are comparing it to the libraries listed below
Sorting:
- Application to extract features from plant root images☆18Updated 3 years ago
- Plant Phenotyping APP☆45Updated 7 months ago
- Analysis tools for SLEAP-based plant root phenotyping.☆11Updated last week
- Code for the paper "Segmentation of Roots in Soil with U-Net"☆16Updated 4 months ago
- Deprecated - LeafMachine is a GUI that autonomously extracts leaf trait data from herbarium vouchers using CNNs, SVMs, and CV algorithms.…☆15Updated 2 years ago
- Source code for SegRoot☆18Updated 5 years ago
- Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping☆38Updated this week
- Open source Python library for building bioimage analysis pipelines☆167Updated last week
- GRID: Deal with Field Segmentations Elegantly☆33Updated 5 months ago
- Deep learning for plant phenotyping.☆138Updated 4 years ago
- Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.☆25Updated last year
- Tools for Plant Image Analysis☆52Updated 8 months ago
- In silico plant phenotyping environment☆20Updated 2 years ago
- scivision: a framework for scientific image analysis☆98Updated this week
- ☆49Updated 10 months ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆42Updated 2 years ago
- Easy Plant Phenotyping Tool for both indoor and outdoor use.☆11Updated 4 years ago
- Wildbook's Image Analysis (WBIA) backend service supporting machine learning for wildlife conservation☆83Updated last month
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆111Updated last week
- ☆23Updated last month
- Collection of recent work on using computer vision and aerial imagery for wildlife conservation.☆18Updated 5 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆137Updated last week
- Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.☆13Updated 3 months ago
- Characterization of 3D plant development for graminae crops☆19Updated 3 weeks ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- ☆16Updated 2 years ago
- A handy tool for dealing with region of interest (ROI) on the image reconstruction (Metashape & Pix4D) outputs, mainly in agriculture app…☆48Updated this week
- LeafMachine2 is a modular suite of computer vision and machine learning algorithms that enables efficient identification, location, and m…☆28Updated 3 months ago
- Foundation models & LLMs☆46Updated last month
- An explainable Deep Machine Vision framework for Plant Stress Phenotyping☆15Updated 3 years ago