Alternatives and similar repositories for root_painter

Users that are interested in root_painter are comparing it to the libraries listed below

• robail-yasrab / RootNav-2.0
  Plant Phenotyping APP
  ☆48Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆188Updated this week
• mianalysis / mia
  Modular, object-based analysis for ImageJ/Fiji
  ☆16Updated last week
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆124Updated this week
• yapic / yapic
  Yet Another Pixel Classifier (based on deep learning)
  ☆36Updated last year
• predictivephenomics / RhizoVisionExplorer
  Application to extract features from plant root images
  ☆27Updated 3 months ago
• bnsreenu / digitalsreeni-image-annotator
  A python based GUI to annotate images and save annotations as COCO style JSON format.
  ☆234Updated 4 months ago
• talmolab / sleap-roots
  Analysis tools for SLEAP-based plant root phenotyping.
  ☆13Updated 2 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆127Updated last year
• HelmholtzAI-Consultants-Munich / fg-clustering
  Explainability for Random Forest Models.
  ☆32Updated 2 weeks ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆177Updated 3 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆153Updated 3 weeks ago
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆47Updated 9 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Updated last year
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆238Updated 11 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 3 years ago
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆180Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆139Updated this week
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆130Updated 6 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 9 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆152Updated this week
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆21Updated 3 weeks ago
• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆31Updated last month
• the-lay / tiler
  N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
  ☆75Updated 8 months ago
• ilastik / tiktorch
  Tiktorch
  ☆12Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆80Updated 6 months ago
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆45Updated 10 months ago
• filippocastelli / pyometiff
  OME-TIFF IO in python
  ☆26Updated 9 months ago