A python based GUI to annotate images and save annotations as COCO style JSON format.
☆267Aug 6, 2026Updated last month
Alternatives and similar repositories for digitalsreeni-image-annotator
Users that are interested in digitalsreeni-image-annotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- ☆16Updated this week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 9 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 9 months ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 3 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆21Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Scientific Dataset Quality Control and Data Exploration Tool☆28Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 9 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Sep 2, 2026Updated 2 weeks ago
- The python-microscopy environment - an open-source package for light microscopy☆100Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆101Mar 24, 2026Updated 5 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 7 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆98May 15, 2026Updated 4 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 9 months ago
- ☆27Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆124May 22, 2026Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆131Updated this week
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago
- Parse geosoft (GRD) grid and save as geotiff☆11May 16, 2023Updated 3 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆157Jan 11, 2026Updated 8 months ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 31, 2026Updated 2 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 7 months ago
- ☆243Jul 30, 2026Updated last month
- A collection of useful python utilities from True North Intelligent Algorithms