Pipelines developed and used by 4DN-DCIC in Common Workflow Language
☆10Jul 11, 2024Updated 2 years ago
Alternatives and similar repositories for pipelines-cwl
Users that are interested in pipelines-cwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Data portal for submitting and viewing genomic data☆14Oct 26, 2026Updated 2 weeks ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 10 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 6 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Oct 21, 2016Updated 10 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 4 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Aug 22, 2026Updated 2 months ago
- This is a read-only mirror of the CRAN R package repository. fastcluster — Fast Hierarchical Clustering Routines for R and 'Python'. Ho…☆11May 7, 2025Updated last year
- ☆13Jan 23, 2020Updated 6 years ago
- ☆18Apr 29, 2023Updated 3 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Seven Bridges Genomics aligner/caller debugging and analysis tools☆14Nov 20, 2018Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13Nov 15, 2017Updated 8 years ago
- ☆11Aug 10, 2023Updated 3 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- gapped-kmer based whole genome alignment software☆11Jun 11, 2026Updated 5 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 9 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- Demultiplex Illumina FASTQ files☆10May 23, 2025Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Jul 17, 2026Updated 3 months ago
- ☆11Aug 30, 2021Updated 5 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Python bindings for WDL☆10Nov 9, 2017Updated 9 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 6 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Chromatin Loop prediction via Accessibility Model for Protein-mediated loops☆11Jan 20, 2026Updated 9 months ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆16Apr 11, 2026Updated 7 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 6 months ago
Are these results useful?