Chromatin Loop prediction via Accessibility Model for Protein-mediated loops
☆11Jan 20, 2026Updated 9 months ago
Alternatives and similar repositories for CLAMP-paper
Users that are interested in CLAMP-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 7 months ago
- ☆11Aug 30, 2021Updated 5 years ago
- TF Binding and Expression Target Analysis 2☆24Nov 19, 2025Updated 11 months ago
- GenomeSpy-based mutation plots for R☆17Aug 26, 2026Updated 2 months ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Oct 6, 2026Updated 3 weeks ago
- ☆16Feb 11, 2024Updated 2 years ago
- RUVprps enables accurate and scalable RNA-seq normalization without prior knowledge of biological and unwanted variation☆17Updated this week
- ☆11Aug 10, 2023Updated 3 years ago
- ☆37Oct 4, 2024Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 6 years ago
- ☆12Mar 16, 2026Updated 7 months ago
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 10 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gapped-kmer based whole genome alignment software☆11Jun 11, 2026Updated 4 months ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- [TMI 2026] Official implementation of "PGVMS: A Prompt-Guided Unified Framework for Virtual Multiplex IHC Staining with Pathological Sema…☆15May 12, 2026Updated 5 months ago
- ☆11Jul 17, 2026Updated 3 months ago
- Pipelines developed and used by 4DN-DCIC in Common Workflow Language☆10Jul 11, 2024Updated 2 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Awesome list of HiC data analysing tools☆11May 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An algorithm in Python that locates the TLS and lymphoid aggregates in tissues using immune cell coordinates☆12Aug 3, 2026Updated 3 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆58Aug 7, 2026Updated 2 months ago
- ☆17Oct 27, 2026Updated last week
- Explore the Hi-Cs☆12Jul 25, 2026Updated 3 months ago
- The snakemake workflow for whole-exome sequencing analysis and generating vcf files☆11Dec 17, 2022Updated 3 years ago
- Ultraperformant reimplementation of SICER☆60Dec 1, 2025Updated 11 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆31Mar 11, 2023Updated 3 years ago
- ☆11Mar 9, 2025Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- ☆12Jul 24, 2026Updated 3 months ago
- The spatial representation learning for single-cell spatial transcriptomics☆17Updated this week
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated 6 months ago
- Implementation of P-Net as a flexible deep learning tool to generate insights from genetic features.☆12Feb 12, 2024Updated 2 years ago
- Research skills for Claude Code, Codex, and OpenCode.☆23Sep 30, 2026Updated last month
- ☆10Oct 22, 2015Updated 11 years ago