BrainLesion / panoptica
panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
☆23Updated this week
Alternatives and similar repositories for panoptica:
Users that are interested in panoptica are comparing it to the libraries listed below
- ☆62Updated last month
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆42Updated 9 months ago
- A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.☆44Updated last month
- ☆84Updated 4 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 10 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆116Updated 3 weeks ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago
- Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024☆26Updated 4 months ago
- An abundance of augmentation layers☆16Updated last week
- MICCAI Ischemic Stroke LEsion Segmentation 2022 Top 3 Major Voting Ensemble☆21Updated 5 months ago
- Image, point set, and surface registration in PyTorch.☆29Updated 5 months ago
- ☆27Updated last year
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆50Updated last week
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆20Updated last year
- A synthesis pipeline for annotation-free blood vessel segmentation in cerebral 3D OCTA images. Paper accepted @ MICCAI24.☆22Updated last week
- [NeurIPS 2024] Deep Learning in Medical Image Registration: Magic or Mirage?☆14Updated 7 months ago
- Image analysis approaches to analyze the OAI magnetic resonance images☆23Updated 4 months ago
- Glioma Radiotherapy Design by Optimization of a Data and Physics Informed Discrete Loss☆26Updated 2 weeks ago
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates☆50Updated 2 years ago
- Very fast greedy diffeomorphic registration code☆71Updated last week
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆40Updated this week
- ☆29Updated last year
- Ischemic stroke segmentation tool.☆71Updated last month
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆43Updated this week
- A library for performing image registration using deep learning, regularized by inverse consistency☆45Updated this week
- ☆59Updated last month
- A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics☆41Updated 9 months ago
- nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…☆129Updated this week
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆28Updated 2 years ago
- Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization (NeurIPS 2024)☆16Updated 3 months ago