BrainLesion / panopticaLinks
panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
☆26Updated this week
Alternatives and similar repositories for panoptica
Users that are interested in panoptica are comparing it to the libraries listed below
Sorting:
- ☆89Updated 2 months ago
- ☆93Updated last month
- PyTorch implementation of HighRes3DNet☆55Updated last month
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆49Updated last week
- An abundance of augmentation layers☆16Updated last month
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆27Updated last year
- Very fast greedy diffeomorphic registration code☆81Updated 3 months ago
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆80Updated last month
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year
- Image, point set, and surface registration in PyTorch.☆31Updated last month
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆50Updated last month
- Neuroimaging in PyTorch☆98Updated last month
- Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…☆52Updated 7 months ago
- ☆27Updated 2 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆162Updated 2 months ago
- Ischemic stroke segmentation tool.☆73Updated 3 weeks ago
- ☆27Updated last year
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆91Updated last week
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆249Updated last month
- MICCAI Ischemic Stroke LEsion Segmentation 2022 Top 3 Major Voting Ensemble☆22Updated 9 months ago
- This is a tool to quickly preview nifti images on the terminal☆64Updated 6 months ago
- Implementation of the DeepVesselNet deep learning network☆151Updated 2 years ago
- Official repository for "Glioma Radiotherapy Design by Optimization of a Data and Physics Informed Discrete Loss" (Nature Communications …☆30Updated last month
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆91Updated 11 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆162Updated 3 months ago
- A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics☆47Updated last year
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆42Updated last month
- Library for generating images by sampling a GMM conditioned on label maps☆27Updated last year
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation☆16Updated last year