BrainLesion / panopticaLinks
panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
☆27Updated 2 months ago
Alternatives and similar repositories for panoptica
Users that are interested in panoptica are comparing it to the libraries listed below
Sorting:
- ☆92Updated 6 months ago
- ☆102Updated 2 months ago
- An abundance of augmentation layers☆17Updated this week
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆118Updated 3 weeks ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆71Updated last month
- Very fast greedy diffeomorphic registration code☆82Updated 6 months ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆258Updated 2 months ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated last year
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆87Updated 2 weeks ago
- Skeleton segmentation in CT images☆28Updated 9 months ago
- ☆28Updated 3 months ago
- PyTorch implementation of HighRes3DNet☆55Updated 4 months ago
- Ischemic stroke segmentation tool.☆82Updated 4 months ago
- Library for generating images by sampling a GMM conditioned on label maps☆27Updated last year
- Image, point set, and surface registration in PyTorch.☆34Updated 4 months ago
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆32Updated last year
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆51Updated 4 months ago
- This is a tool to quickly preview nifti images on the terminal☆66Updated 10 months ago
- Image analysis approaches to analyze the OAI magnetic resonance images☆27Updated 11 months ago
- MICCAI Ischemic Stroke LEsion Segmentation 2022 Top 3 Major Voting Ensemble☆26Updated last year
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆172Updated 2 weeks ago
- Implementation of the DeepVesselNet deep learning network☆153Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆79Updated this week
- nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…☆327Updated last week
- Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…☆62Updated 10 months ago
- A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.☆134Updated 2 weeks ago
- A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics☆46Updated last year
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆194Updated 2 months ago