bihealth / vcfpyLinks
Python 3 library with good support for both reading and writing VCF
☆111Updated 2 months ago
Alternatives and similar repositories for vcfpy
Users that are interested in vcfpy are comparing it to the libraries listed below
Sorting:
- Efficiently read and write sequencing data from Python☆68Updated 2 months ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated 2 months ago
- Simple vcf parser, based on PyVCF☆48Updated 7 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- Transcript versions for HGVS libraries☆33Updated last month
- VCF-kit: Assorted utilities for the variant call format☆132Updated 5 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Platypus Variant Caller☆108Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 3 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- TransVar - multiway annotator for precision medicine☆125Updated 2 years ago
- Monitor computational workflows in real time☆74Updated last year
- VCF visualization interface☆175Updated this week
- Sequana: a set of Snakemake NGS pipelines☆151Updated 3 weeks ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A Variant Call Format reader for Python.☆58Updated 7 months ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- A collection of reusable WDL tasks. Category:Other☆88Updated this week
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 8 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆144Updated 4 months ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 3 weeks ago
- Small utilities for working with fastq sequence files.☆123Updated 3 years ago
- IGV Web App☆126Updated this week
- ABRA2☆95Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated last week