Alternatives and similar repositories for vcfpy

Users that are interested in vcfpy are comparing it to the libraries listed below

• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆130Updated last month
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆65Updated 5 months ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆77Updated this week
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated 2 weeks ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆66Updated 3 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 weeks ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆166Updated last year
• Clinical-Genomics / scout
  VCF visualization interface
  ☆169Updated this week
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆79Updated 2 months ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆45Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 6 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆66Updated 2 years ago
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆165Updated this week
• Illumina / GTCtoVCF
  Script to convert GTC/BPM files to VCF
  ☆47Updated 11 months ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 weeks ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆97Updated last year
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆34Updated 3 months ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆191Updated 7 months ago
• WGLab / Phen2Gene
  Phenotype driven gene prioritization for HPO
  ☆47Updated 4 years ago
• MikkelSchubert / adapterremoval
  AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
  ☆113Updated 3 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 8 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 4 months ago
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago