Alternatives and similar repositories for vcfpy

Users that are interested in vcfpy are comparing it to the libraries listed below

• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 3 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆64Updated last month
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆76Updated last week
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated 2 weeks ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆32Updated 3 weeks ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆131Updated last week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆163Updated last year
• Clinical-Genomics / scout
  VCF visualization interface
  ☆169Updated last week
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆45Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 4 months ago
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆162Updated this week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• pcingola / SnpSift
  ☆38Updated 5 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated 3 months ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆98Updated last year
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• Illumina / Cyrius
  A tool to genotype CYP2D6 with WGS data
  ☆53Updated last year
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆186Updated 6 months ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆93Updated 3 months ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆85Updated 9 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 2 months ago