Alternatives and similar repositories for vcfpy

Users that are interested in vcfpy are comparing it to the libraries listed below

• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆132Updated 5 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 2 months ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• Clinical-Genomics / scout
  VCF visualization interface
  ☆176Updated 2 weeks ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆174Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 2 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 weeks ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 3 weeks ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆48Updated 7 years ago
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆172Updated this week
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆188Updated last year
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 months ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆66Updated 2 months ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆123Updated 3 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last month
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆101Updated last year
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated this week
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated last month
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 8 months ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• Illumina / Cyrius
  A tool to genotype CYP2D6 with WGS data
  ☆55Updated 2 years ago
• statgen / bamUtil
  ☆91Updated 3 years ago