bihealth / vcfpyLinks
Python 3 library with good support for both reading and writing VCF
☆109Updated this week
Alternatives and similar repositories for vcfpy
Users that are interested in vcfpy are comparing it to the libraries listed below
Sorting:
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated 2 weeks ago
- Transcript versions for HGVS libraries☆33Updated last month
- Efficiently read and write sequencing data from Python☆66Updated 2 weeks ago
- Platypus Variant Caller☆108Updated last year
- Public repository for VariantValidator project☆77Updated last week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆166Updated last year
- Short-read and long-read sequencing tools for diagnostics☆165Updated this week
- VCF-kit: Assorted utilities for the variant call format☆130Updated 2 months ago
- VCF visualization interface☆168Updated this week
- Monitor computational workflows in real time☆73Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Long read production pipelines☆148Updated last week
- ABRA2☆92Updated 2 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆142Updated 2 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆88Updated 7 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- The nimble & robust variant annotator☆185Updated last year
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆89Updated 11 months ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago