Alternatives and similar repositories for vcfpy

Users that are interested in vcfpy are comparing it to the libraries listed below

• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 3 months ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated 2 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 3 months ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆175Updated last year
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 3 months ago
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆132Updated 6 months ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆79Updated 2 weeks ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆101Updated last year
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆85Updated 3 weeks ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆48Updated 7 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last week
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆35Updated 3 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆59Updated last year
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆173Updated this week
• seppinho / mutserve
  mtDNA Variant Caller
  ☆35Updated last year
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆70Updated 2 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆82Updated 3 weeks ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 9 months ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆67Updated 3 weeks ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆86Updated 8 years ago
• mozack / abra2
  ABRA2
  ☆95Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month