Alternatives and similar repositories for vcfpy

Users that are interested in vcfpy are comparing it to the libraries listed below

• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 2 months ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆174Updated last year
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆48Updated 7 years ago
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆132Updated 6 months ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated this week
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆101Updated last year
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆82Updated last week
• Clinical-Genomics / scout
  VCF visualization interface
  ☆176Updated 3 weeks ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 months ago
• mutalyzer / mutalyzer2
  HGVS variant nomenclature checker
  ☆98Updated 2 years ago
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆172Updated last week
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆123Updated 3 years ago
• saphetor / varsome-api-client-python
  Example client programs for Saphetor's VarSome annotation API
  ☆36Updated 3 months ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆80Updated 3 weeks ago
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆35Updated 2 months ago
• bjhall / upd
  Basic UPD caller
  ☆12Updated 4 years ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆79Updated this week
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆144Updated 5 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated last month
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆69Updated 2 years ago
• mozack / abra2
  ABRA2
  ☆95Updated 3 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆64Updated 3 weeks ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆131Updated 2 months ago