bihealth / vcfpyLinks
Python 3 library with good support for both reading and writing VCF
☆109Updated last week
Alternatives and similar repositories for vcfpy
Users that are interested in vcfpy are comparing it to the libraries listed below
Sorting:
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated last month
- Platypus Variant Caller☆108Updated last year
- VCF visualization interface☆169Updated this week
- Simple vcf parser, based on PyVCF☆47Updated 6 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆170Updated last year
- Transcript versions for HGVS libraries☆33Updated this week
- Public repository for VariantValidator project☆77Updated this week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated last month
- Efficiently read and write sequencing data from Python☆67Updated last month
- Short-read and long-read sequencing tools for diagnostics☆167Updated this week
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- VCF-kit: Assorted utilities for the variant call format☆130Updated 3 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆67Updated 2 years ago
- Basic UPD caller☆12Updated 4 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆34Updated 3 weeks ago
- A Python package for pharmacogenomics (PGx) research☆79Updated 7 months ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- TIDDIT - structural variant calling☆76Updated 6 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- C++ Library to parse Illumina InterOp files☆79Updated 3 months ago
- ABRA2☆93Updated 2 years ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆64Updated 2 months ago
- The nimble & robust variant annotator☆185Updated last year