Genetic risk prediction integrating LD and functional annotations
☆16Jul 19, 2024Updated last year
Alternatives and similar repositories for AnnoPred
Users that are interested in AnnoPred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year
- ☆103Jun 26, 2022Updated 3 years ago
- ☆16Dec 7, 2020Updated 5 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Jun 4, 2024Updated 2 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆46Oct 23, 2025Updated 7 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 5 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Polygenic prediction via continuous shrinkage priors☆203Nov 21, 2024Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆34Apr 10, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- CGM 主站☆11Jun 8, 2026Updated last week
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆207Apr 10, 2026Updated 2 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 7 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- software package for integrative genetic association analysis☆37Jul 8, 2023Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- Paint made with ImGui☆12Jan 14, 2023Updated 3 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- ☆11Jan 22, 2017Updated 9 years ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆15Sep 5, 2019Updated 6 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Jan 24, 2022Updated 4 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Jan 18, 2016Updated 10 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- ☆12Mar 18, 2026Updated 2 months ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 7 years ago
- development of network co-localization tool☆16Mar 2, 2026Updated 3 months ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 9 months ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 9 years ago