yangfenglong / mAML1.0
Automated machine learning model building pipeline for microbiome data
☆9Updated last year
Related projects ⓘ
Alternatives and complementary repositories for mAML1.0
- ☆45Updated 7 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 2 weeks ago
- ☆21Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- ☆15Updated this week
- ☆14Updated this week
- ☆30Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 6 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆48Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆46Updated 2 years ago
- A Port of SparCC by Yonatan Friedman to Python3☆14Updated 4 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- IslandPath standalone software☆31Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆38Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆30Updated 4 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆31Updated 2 weeks ago
- GO KEGG annotation☆27Updated 2 years ago
- ☆23Updated 9 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- ☆12Updated 2 weeks ago
- A microbiome analysis toolkit for R☆20Updated last year