y9c / cfutilsLinks
🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
☆23Updated 8 months ago
Alternatives and similar repositories for cfutils
Users that are interested in cfutils are comparing it to the libraries listed below
Sorting:
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 8 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- A Python module to analyze Sanger sequencing results.☆24Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated this week
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- A reference viral database (RVDB)☆26Updated 7 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated 2 years ago
- ☆34Updated 2 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 8 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60Updated 6 years ago
- parallelized blat with multi-threads support☆55Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated last month
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Get, parse, and extract information from the SRA metadata files☆46Updated 3 years ago
- Python bindings for the TaxonKit library☆43Updated this week
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago