y9c / cfutils
𧬠Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
β23Updated 5 months ago
Alternatives and similar repositories for cfutils:
Users that are interested in cfutils are comparing it to the libraries listed below
- A package to annotate protein sequencesβ58Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsβ59Updated 7 months ago
- Detection of incorrectly labeled sequences across kingdomsβ85Updated 2 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browserβ81Updated last year
- Error correction for Illumina RNA-seq readsβ66Updated last year
- Python bindings for the TaxonKit libraryβ39Updated 3 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fβ¦β31Updated 3 years ago
- β32Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomesβ63Updated 2 months ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotationβ27Updated last year
- Simple bacterial assembly and annotation pipelineβ73Updated last week
- CLI tool to annotate genes with KOfamβ80Updated last year
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targβ¦β18Updated 6 years ago
- A Python module to analyze Sanger sequencing results.β24Updated last year
- seqfu - Sequece Fastx Utilitiesβ114Updated 3 months ago
- Small variant calling for haploid samplesβ35Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ57Updated last year
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.β30Updated 6 years ago
- Tandem Repeat Annotation Libraryβ25Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.β54Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ70Updated 3 years ago
- β24Updated 2 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.β47Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence dataβ21Updated 3 years ago
- This repository hosts a large collection of Nextflow snippetsβ57Updated 3 months ago
- β26Updated 4 years ago
- Nextflow workflow template repositoryβ18Updated this week
- Efficiently read and write sequencing data from Pythonβ63Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencingβ21Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparisonβ57Updated last year