🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
☆23May 22, 2025Updated 9 months ago
Alternatives and similar repositories for cfutils
Users that are interested in cfutils are comparing it to the libraries listed below
Sorting:
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆121Updated this week
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Feb 13, 2025Updated last year
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆32Mar 27, 2018Updated 7 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.☆18Sep 24, 2018Updated 7 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.☆46Jun 26, 2025Updated 8 months ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 10 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Dec 4, 2018Updated 7 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 4 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆29Updated this week
- 🍶 Genome assembly with short sequence reads☆25Jan 21, 2024Updated 2 years ago
- profile basd Illumina pair-end Reads Simulator☆28Dec 18, 2023Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- ☆33Jan 11, 2025Updated last year
- Module for reading ABI Sanger sequencing trace files☆40Jun 15, 2016Updated 9 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated last month
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- RILseq computational protocol☆10Apr 3, 2022Updated 3 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆10Feb 10, 2024Updated 2 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Nov 18, 2025Updated 3 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 5 months ago