Singularity 101
ā30Oct 17, 2019Updated 6 years ago
Alternatives and similar repositories for Singularity-tutorial
Users that are interested in Singularity-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ā14Mar 8, 2017Updated 9 years ago
- Repository with all my container recipes š©āš³ā17Sep 9, 2024Updated last year
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis toolsā11Apr 26, 2020Updated 6 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.ā10May 15, 2026Updated 3 weeks ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.ā12Jan 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer ⢠AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utilities to support interacting with multiple HPC clustersā11Nov 21, 2025Updated 6 months ago
- catalog for long-read sequencing toolsā32Feb 14, 2023Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assembliesā13Jun 30, 2023Updated 2 years ago
- This repository contains sample code to help you extend your LSF cluster to the cloud. It provides fully functional examples of how to sā¦ā16Dec 17, 2025Updated 5 months ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidisā15Feb 19, 2026Updated 3 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarityā13Aug 14, 2023Updated 2 years ago
- ā11Jun 29, 2021Updated 4 years ago
- Long read metagenomics practical at EBAME18ā18Oct 3, 2018Updated 7 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized fā¦ā14Apr 21, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits ⢠AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- base documentation site for Singularity softwareā27Feb 15, 2022Updated 4 years ago
- HashiCorp Nomad driver plugin - Singularityā27Mar 30, 2023Updated 3 years ago
- Node feature discovery, detects the available hardware features and configuration in a cluster.ā17May 21, 2026Updated 2 weeks ago
- Singularity Image Format (SIF) reference implementation.ā27Jun 1, 2026Updated last week
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.ā15Updated this week
- Archived - please see updated sccmec tool at link belowā13Aug 30, 2024Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencingā14Jun 14, 2022Updated 3 years ago
- MIME detector for human in Golang.ā14May 29, 2020Updated 6 years ago
- Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.ā130Dec 13, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer ⢠AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CFSAN Shigella Typing Pipelineā15Jul 6, 2023Updated 2 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experimentā20Nov 12, 2025Updated 6 months ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencingā11Mar 16, 2026Updated 2 months ago
- A tool to alleviate your Python package installation worries.ā20Jul 21, 2023Updated 2 years ago
- VIGOR4ā22Aug 15, 2025Updated 9 months ago
- A scientific web portal that allows users to create and submit workflows to HTCondor (Dagman), Slurm, OpenLava (LSF), Torque (PBS)ā20Aug 14, 2017Updated 8 years ago
- Manage traditional HPC cluster workflows in Pythonā14Apr 6, 2018Updated 8 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.ā16Apr 22, 2026Updated last month
- Finding prophage regions in bacterial genomes using brute forceā22Jan 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean ⢠AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ā22Jun 1, 2026Updated last week
- A simple nextflow pipeline for running kraken2 and bracken in a docker containerā21Oct 8, 2025Updated 8 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.ā15Oct 6, 2021Updated 4 years ago
- Luslab nextflow modulesā14Apr 30, 2021Updated 5 years ago
- The MPI parallel MD-Workbench simulates user activities.ā12Jun 23, 2019Updated 6 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.ā11May 19, 2020Updated 6 years ago
- slides for UseR2021 presentationā20Jul 5, 2021Updated 4 years ago