Alternatives and similar repositories for LEMMA

Users that are interested in LEMMA are comparing it to the libraries listed below

• Atkinson-Lab / Post-QC
  Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…
  ☆10Updated 6 years ago
• qlu-lab / QUAIL
  A unified framework to estimate genetic effects on the variance of quantitative traits
  ☆12Updated 2 years ago
• richardslab / Ei
  Data and code for the Effector index
  ☆13Updated 4 years ago
• jmacdon / LDblocks_GRCh38
  ☆10Updated 9 months ago
• kaustubhad / gwas-power
  R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…
  ☆20Updated 6 years ago
• bogdanlab / h2-GRE
  Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…
  ☆14Updated 5 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• lukejoconnor / SLD4M
  Software implementing stratified LD fourth moments regression.
  ☆10Updated 6 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• msesia / knockoffzoom
  A flexible tool for the multi-resolution localization of causal variants across the genome
  ☆11Updated 4 years ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 4 months ago
• awohns / ldgm
  Software for linkage disequilibrium graphical models
  ☆16Updated 2 months ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 2 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• rivas-lab / snpnet
  snpnet - Efficient Lasso Solver for Large-scale genetic variant data
  ☆18Updated last year
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 2 months ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 8 months ago
• sunnyeesl / BigLD
  ☆21Updated 2 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 3 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆20Updated 2 years ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 5 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 9 months ago
• salbrec / seqQscorer
  ☆22Updated last month
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆25Updated 11 months ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆34Updated last year
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago