wiggins-lab / SuperSeggerLinks
A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
☆33Updated 4 years ago
Alternatives and similar repositories for SuperSegger
Users that are interested in SuperSegger are comparing it to the libraries listed below
Sorting:
- Toolbox for the analysis of smFISH images.☆65Updated last year
- MS Word template for styling a manuscript for a bioRxiv submission☆38Updated 6 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆49Updated last month
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 5 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Image classification for imaging flow cytometry.☆29Updated 5 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated this week
- Example vignette for dotdotdot software☆18Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- Find profile pairs and compute metrics between them.☆17Updated this week
- Python implementation of the ElPiGraph algorithm with cpu and gpu support☆18Updated 8 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- Software for processing and analyzing STARmap experiments.☆38Updated 5 years ago
- Deep Learning Library for Spot Detection☆19Updated last year
- scGEAToolbox: Matlab toolbox for single-cell gene expression analyses☆26Updated this week
- CellProfiler tutorial pipelines and images☆93Updated last month
- Your Personal Assistant in Computational Bioimaging.☆42Updated 3 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago