A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
☆32Dec 1, 2020Updated 5 years ago
Alternatives and similar repositories for SuperSegger
Users that are interested in SuperSegger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OmniSegger - from the Wiggins Lab at UW☆11Sep 10, 2025Updated 7 months ago
- segmentation of rod-shaped bacteria☆15Mar 25, 2023Updated 3 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Matlab code to collect real time data from Contec Pulse Oximeters (Heart rate monitor). Please note, this is unsupported and unofficial c…☆15Mar 25, 2019Updated 7 years ago
- Version 3 of Python mother machine analysis code☆12Jun 22, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10Feb 5, 2026Updated 2 months ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆52Mar 12, 2026Updated last month
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆11Jul 13, 2025Updated 9 months ago
- Pair correlation function analysis of fluorescence fluctuations in big image time series.☆10Feb 25, 2026Updated last month
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 8 months ago
- This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 202…☆14Jan 19, 2023Updated 3 years ago
- Stack denoising autoencoder (SdA) code in "Deep learning based functional site-level and UTR-level human miRNA target prediction"☆11May 7, 2019Updated 6 years ago
- python library for particles tracking in 2D+t and 3D+t scientific images☆17Jun 5, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Mar 15, 2017Updated 9 years ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 5 years ago
- Cloud-based data annotation tools for biological images☆84Feb 14, 2024Updated 2 years ago
- JAMA is a device to measure joint angles wirelessly with 9 DOF, using a microcontroller (ESP32) together with an inertial measure unit (…☆12Sep 28, 2021Updated 4 years ago
- Detecting the starting frame of actions in video.☆10Feb 12, 2020Updated 6 years ago
- Scripts to perform active learning as described in the referenced article.☆13Sep 17, 2025Updated 6 months ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Schedules tweets using TweetDeck☆15Jan 30, 2020Updated 6 years ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11May 3, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Manage (create, list, modify and delete) and starting jupyter kernels using sbatch☆14Mar 20, 2023Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 5 years ago
- [ICLR 2025] Official Implementation of ParetoFlow: Guided Flows in Multi-Objective Optimization🧬🧬🧬☆29Mar 3, 2025Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- SQL on CSV files in the shell☆15Apr 6, 2018Updated 8 years ago
- ☆12Nov 7, 2019Updated 6 years ago
- This repository is the official implementation of Generalized Data Weighting via Class-level Gradient Manipulation (NeurIPS 2021)(http://…☆22Oct 8, 2022Updated 3 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 6, 2026Updated last week
- University of Groningen PhD thesis template☆17Apr 6, 2022Updated 4 years ago
- A loose collections of functions to prepare plots in R☆11Nov 17, 2017Updated 8 years ago
- ChiBio primary operating system.☆28Feb 10, 2026Updated 2 months ago
- Electron-based multiplexed imaging viewer☆27Mar 12, 2024Updated 2 years ago
- A Harris corner detection implementation written in Matlab.☆29Apr 23, 2013Updated 12 years ago
- ☆12Apr 9, 2018Updated 8 years ago