Alternatives and similar repositories for SuperSegger:

Users that are interested in SuperSegger are comparing it to the libraries listed below

• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• pswapnesh / misic
  segmentation of rod-shaped bacteria
  ☆15Updated 2 years ago
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆21Updated this week
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• DanuserLab / u-track
  Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …
  ☆47Updated 2 weeks ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆18Updated 2 months ago
• vanvalenlab / deepcell-spots
  Deep Learning Library for Spot Detection
  ☆16Updated last year
• biocompibens / pySpacell
  A Python package for single-cell spatial image analysis.
  ☆18Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆34Updated 4 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• LieberInstitute / dotdotdot
  Example vignette for dotdotdot software
  ☆18Updated 3 years ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 5 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated last month
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆16Updated 2 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆24Updated last year
• DrHanLim / EzColocalization
  ☆10Updated 4 years ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆73Updated 3 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated 3 weeks ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• chrelli / bioRxiv-word-template
  MS Word template for styling a manuscript for a bioRxiv submission
  ☆37Updated 6 years ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 8 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆133Updated last month
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 3 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• mjin1812 / SMART
  Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
  ☆14Updated 3 years ago