Alternatives and similar repositories for exon-duckdb:

Users that are interested in exon-duckdb are comparing it to the libraries listed below

• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 2 months ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated last month
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆24Updated last month
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated last month
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 6 months ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 5 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆48Updated 3 weeks ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated this week
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆14Updated last month
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆20Updated this week
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆34Updated last month
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated last month
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated this week
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• JaneliaSciComp / nextflow-spark
  ☆14Updated 2 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 2 months ago
• sandbox-bio / sandbox.bio
  Interactive bioinformatics tutorials
  ☆25Updated this week
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆12Updated 5 months ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated last year
• COMBINE-lab / pyroe
  ☆16Updated last week
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆20Updated this week
• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 3 weeks ago