DuckDB Extension for working with bioinformatic data.
☆19Oct 18, 2023Updated 2 years ago
Alternatives and similar repositories for exon-duckdb
Users that are interested in exon-duckdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆21Jun 19, 2023Updated 3 years ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- secondary analysis pipelines parallelized with apache spark☆18Mar 2, 2022Updated 4 years ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Oct 14, 2020Updated 5 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆60Aug 6, 2023Updated 3 years ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- A server implementation of the htsget protocol for bioinformatics in Rust☆50Aug 3, 2026Updated last week
- ☆15Aug 14, 2020Updated 6 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆109Updated this week
- port4me - Get the Same, Personal, Free TCP Port over and over☆13Mar 1, 2024Updated 2 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 9 years ago
- A curated list of extendr-powered, rust-based R-packages☆28Updated this week
- [DEPRECATED] An R package to pre-process bulk EKG data and detect the physiological peaks☆12Aug 22, 2016Updated 9 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 8 months ago
- R Package for Hierarchical Regularized Regression to Incorporate External Data☆10Dec 17, 2025Updated 7 months ago
- pCMF R package☆14Apr 16, 2019Updated 7 years ago
- ☆18Jun 19, 2024Updated 2 years ago
- A language for sorcery☆21Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A simple framework for ANOVA on various types of Julia statistical models☆20Jan 4, 2026Updated 7 months ago
- ☆12Feb 2, 2026Updated 6 months ago
- Slides and example code for debugging {targets} pipelines☆10Apr 17, 2025Updated last year
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 3 months ago
- Accessible Breakout Experiment☆10Aug 28, 2015Updated 10 years ago
- ggCorpIdent: A package for ggplot2 graphics in corporate design with custom fonts, colors and logo.☆13Apr 4, 2019Updated 7 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- ☆13May 2, 2018Updated 8 years ago
- ☆15Mar 13, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ESANN20 paper code repository. This package is a perplexity-free extension of Parametric t-SNE dimensionality reduction method implemente…☆23Mar 24, 2023Updated 3 years ago
- A Gene Finder framework for Julia.☆15Jan 16, 2026Updated 6 months ago
- Quick demo of the risks of using 'Depends' in R packages☆14Jun 7, 2018Updated 8 years ago
- Build your talk calendar for rstudio::global(2021)☆14Jan 22, 2021Updated 5 years ago
- code for tutorials, office hours, and other help i've given☆13Jun 4, 2025Updated last year
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- Manual Baseline Models☆10Nov 7, 2024Updated last year