Alternatives and similar repositories for exon-duckdb:

Users that are interested in exon-duckdb are comparing it to the libraries listed below

• wheretrue / fasql
  DuckDB Extension for reading and writing FASTA and FASTQ Files
  ☆21Updated last year
• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 4 months ago
• knightlab-analyses / american-gut-analyses
  ☆15Updated 6 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• JaneliaSciComp / nextflow-spark
  ☆14Updated last month
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆9Updated 2 years ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 10 months ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 8 months ago
• ngs-docs / 2023-snakemake-book-draft
  A DRAFT, early stage book on snakemake.
  ☆18Updated last year
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 months ago
• stjudecloud / ngsderive
  Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
  ☆11Updated this week
• qibebt-bioinfo / meta-storms
  Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software re…
  ☆10Updated 5 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆23Updated 8 years ago
• gexijin / datamap
  DataMap is a browser-based app for visualizing data using heatmaps, PCA plots, and t-SNE plots.
  ☆50Updated last week
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last month
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆25Updated 9 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 3 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 3 weeks ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated this week
• obonyojimmy / nf-parser
  nextflow parser
  ☆9Updated last year
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆63Updated last month
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated last month
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆34Updated 2 months ago
• dib-lab / kProcessor
  kProcessor: kmers processing framework.
  ☆11Updated last year
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago