Alternatives and similar repositories for exon-duckdb:

Users that are interested in exon-duckdb are comparing it to the libraries listed below

• vsbuffalo / duckdb-vcf-extension
  ☆10Updated last month
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 6 months ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 weeks ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated last month
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated 3 weeks ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆17Updated this week
• natir / vcf2parquet
  Convert vcf in parquet
  ☆24Updated 3 weeks ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 7 months ago
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 3 weeks ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆22Updated 5 months ago
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆9Updated 2 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated last month
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 8 months ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 2 months ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆10Updated last month
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆30Updated this week
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆31Updated last week
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆12Updated 2 weeks ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last month
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆25Updated 6 months ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• NDBL / HECIL
  Hybrid Error Correction of Long Reads using Iterative Learning
  ☆10Updated 6 years ago