SecureDNA / quickdna
Fast DNA manipulation for Rust and Python
☆44Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for quickdna
- Modular cloning simulation with the MoClo framework in Python☆12Updated 2 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆126Updated 5 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆41Updated this week
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆35Updated 3 weeks ago
- Codon's bioinformatics module☆46Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 9 months ago
- Single-Cell RNA-seq pseudo-aligner☆50Updated 6 months ago
- Comparative Genomics Toolkit 3☆102Updated this week
- Simple terminal alignment viewer☆78Updated 2 months ago
- De Bruijn graphs in Rust☆63Updated 4 months ago
- The D4 Quantitative Data Format☆158Updated last month
- A library of common biomedical types.☆34Updated last week
- A genomic minhashing implementation in Rust☆93Updated 10 months ago
- FASTA and FASTQ parsing in Rust☆72Updated 11 months ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆21Updated 2 years ago
- A set of command line utilities based on Rust-Bio.☆184Updated 4 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆42Updated 10 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆164Updated 2 weeks ago
- Native python implementation of SBOL 3.0 specification☆37Updated 7 months ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆52Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆116Updated 3 years ago
- 👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.☆18Updated 3 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆14Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆174Updated 3 weeks ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 3 months ago
- nucleic acid folding☆84Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆212Updated 2 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆108Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Efficient querying of biological databases☆28Updated this week