SecureDNA / quickdna
Fast DNA manipulation for Rust and Python
☆55Updated last week
Alternatives and similar repositories for quickdna:
Users that are interested in quickdna are comparing it to the libraries listed below
- A library of common biomedical types.☆38Updated last week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆136Updated 10 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated 11 months ago
- Modular cloning simulation with the MoClo framework in Python☆12Updated 2 years ago
- A set of command line utilities based on Rust-Bio.☆193Updated 10 months ago
- protein utilities in Rust☆28Updated this week
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 2 weeks ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆62Updated last month
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆37Updated last week
- A tool to create visual HTML reports from collections of CSV/TSV tables☆117Updated this week
- FASTA and FASTQ parsing in Rust☆77Updated last month
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆22Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 2 weeks ago
- ☆51Updated 2 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆44Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆185Updated this week
- Efficient querying of biological databases☆35Updated 2 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆182Updated last month
- 🧬 Efficient parallelized peta-scale protein database search☆41Updated last year
- Codon's bioinformatics module☆50Updated last week
- The D4 Quantitative Data Format☆161Updated this week
- Rust bindings to minimap2 library☆93Updated 3 months ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆182Updated last month
- A pairwise sequence aligner written in Rust☆132Updated 3 weeks ago
- Parsing MHC nomenclature in the wild☆16Updated last month
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 2 weeks ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- De Bruijn graphs in Rust☆67Updated 9 months ago
- A route planner for DNA assembly☆33Updated 3 weeks ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆54Updated 2 years ago