SecureDNA / quickdnaLinks
Fast DNA manipulation for Rust and Python
☆59Updated last week
Alternatives and similar repositories for quickdna
Users that are interested in quickdna are comparing it to the libraries listed below
Sorting:
- A library of common biomedical types.☆40Updated 7 months ago
- Fast FASTX parsing and k-mer methods in Rust☆200Updated 4 months ago
- A high efficiency binary format for sequencing data☆78Updated last month
- A set of command line utilities based on Rust-Bio.☆201Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆138Updated last year
- a python bioinformatics framework☆169Updated this week
- ☆50Updated 3 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Updated 7 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆190Updated 8 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- FASTA and FASTQ parsing in Rust☆79Updated 8 months ago
- Command line scientific data management tool☆228Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆39Updated 3 months ago
- WebAssembly modules for genomics☆255Updated 3 weeks ago
- A pairwise sequence aligner written in Rust☆142Updated 3 weeks ago
- Codon's bioinformatics module☆55Updated 3 months ago
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 3 weeks ago
- protein utilities in Rust☆32Updated last week
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆82Updated 7 months ago
- Fasten toolkit, for streaming operations on fastq files☆80Updated 3 weeks ago
- Modular cloning simulation with the MoClo framework in Python☆12Updated 3 years ago
- The D4 Quantitative Data Format☆168Updated 6 months ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆196Updated 3 months ago
- De Bruijn graphs in Rust☆70Updated last year
- Rust crates for working with Workflow Description Language (WDL) documents.☆60Updated last month
- Efficient querying of biological databases☆42Updated 3 weeks ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Updated last year
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆99Updated last week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆59Updated 3 months ago