Alternatives and similar repositories for quickdna

Users that are interested in quickdna are comparing it to the libraries listed below

• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 2 weeks ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆99Updated last month
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆37Updated last month
• Daniel-Liu-c0deb0t / block-aligner
  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …
  ☆136Updated 11 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• althonos / moclo
  Modular cloning simulation with the MoClo framework in Python
  ☆12Updated 3 years ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆190Updated last month
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆48Updated 2 weeks ago
• ChangqingW / SeqSizzle
  ☆15Updated 5 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆77Updated 2 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆89Updated this week
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆17Updated last month
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆69Updated 10 months ago
• steineggerlab / petasearch
  🧬 Efficient parallelized peta-scale protein database search
  ☆41Updated last year
• ferritin-bio / ferritin
  protein utilities in Rust
  ☆30Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆37Updated last week
• exaloop / seq
  Codon's bioinformatics module
  ☆54Updated this week
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆51Updated 2 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆20Updated 3 weeks ago
• datavzrd / datavzrd
  A tool to create visual HTML reports from collections of CSV/TSV tables
  ☆122Updated this week
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆23Updated last month
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last month
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆135Updated last month
• Euphrasiologist / nu_plugin_bio
  Bioinformatics plugin for nushell.
  ☆29Updated last year
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• COMBINE-lab / alevin-fry
  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…
  ☆183Updated 2 weeks ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 2 months ago
• bentsherman / tesseract
  A tool for creating resource prediction models for scientific workflows
  ☆13Updated last year