SecureDNA / quickdnaLinks
Fast DNA manipulation for Rust and Python
☆58Updated 6 months ago
Alternatives and similar repositories for quickdna
Users that are interested in quickdna are comparing it to the libraries listed below
Sorting:
- A library of common biomedical types.☆39Updated 6 months ago
- A high efficiency binary format for sequencing data☆75Updated 2 weeks ago
- A set of command line utilities based on Rust-Bio.☆199Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆198Updated 2 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆137Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆190Updated 7 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆38Updated last month
- ☆50Updated 3 years ago
- FASTA and FASTQ parsing in Rust☆78Updated 7 months ago
- Codon's bioinformatics module☆54Updated 2 months ago
- protein utilities in Rust☆32Updated 4 months ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆128Updated 4 years ago
- a python bioinformatics framework☆168Updated last week
- WebAssembly modules for genomics☆253Updated last month
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆194Updated 2 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Updated 6 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Updated last year
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆81Updated 6 months ago
- Rust crates for working with Workflow Description Language (WDL) documents.☆58Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆80Updated this week
- A pairwise sequence aligner written in Rust☆137Updated 2 months ago
- Efficient querying of biological databases☆42Updated 3 weeks ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 6 months ago
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 6 months ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆55Updated 3 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated 2 months ago
- Modular cloning simulation with the MoClo framework in Python☆12Updated 3 years ago
- Freelance bioinformaticians directory☆10Updated 2 years ago
- De Bruijn graphs in Rust☆70Updated last year