SecureDNA / quickdnaLinks
Fast DNA manipulation for Rust and Python
☆57Updated 4 months ago
Alternatives and similar repositories for quickdna
Users that are interested in quickdna are comparing it to the libraries listed below
Sorting:
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆136Updated last year
- A high efficiency binary format for sequencing data☆69Updated 2 months ago
- A library of common biomedical types.☆38Updated 4 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Efficient querying of biological databases☆42Updated 3 weeks ago
- A set of command line utilities based on Rust-Bio.☆199Updated last year
- FASTA and FASTQ parsing in Rust☆79Updated 5 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 4 months ago
- Fast FASTX parsing and k-mer methods in Rust☆196Updated last month
- protein utilities in Rust☆30Updated 2 months ago
- ☆51Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated 2 weeks ago
- A pairwise sequence aligner written in Rust☆137Updated last month
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 4 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆41Updated last year
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆55Updated 2 years ago
- Rust implmentation of VCF parser☆25Updated 2 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆38Updated last week
- The D4 Quantitative Data Format☆166Updated 4 months ago
- ☆58Updated 3 years ago
- Codon's bioinformatics module☆54Updated 3 weeks ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 4 months ago
- Rust bindings to minimap2 library☆101Updated this week
- Bit-packed and well-typed biological sequences☆35Updated last month
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Updated 5 months ago
- De Bruijn graphs in Rust☆71Updated last year
- Simple terminal alignment viewer☆84Updated last month
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Updated 5 months ago