vyvy3n / DLforGenomics
Review Paper: Deep Learning for Genomics: A Concise Overview
☆74Updated 6 years ago
Related projects: ⓘ
- For anyone who are eager to applying deep learning in bioinformatics!☆116Updated 5 years ago
- A deep learning package for predicting TF binding☆41Updated 4 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆47Updated last month
- Deep learning for gene expression inference☆145Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆143Updated 4 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 4 years ago
- ☆30Updated 4 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- Model zoo for genomics☆163Updated last month
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆44Updated 5 years ago
- ☆52Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆108Updated 7 months ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆167Updated 2 years ago
- DeepSEA in TensorFlow☆28Updated 7 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆155Updated 7 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆20Updated 5 years ago
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 5 years ago
- inferring sequence-structure motifs using deep learning☆36Updated last year
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆172Updated 8 months ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆62Updated 8 years ago
- ☆16Updated 6 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆110Updated 3 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- ☆80Updated 3 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆76Updated 2 weeks ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 3 years ago
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆29Updated 2 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago