bioinformatics-ua / BIcenterLinks
A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.
☆17Updated 3 years ago
Alternatives and similar repositories for BIcenter
Users that are interested in BIcenter are comparing it to the libraries listed below
Sorting:
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Updated 4 years ago
- Workflow Management for Biomedical exploration☆30Updated 7 years ago
- Semantic Web Services Integration for Biomedical Applications☆12Updated 8 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated last month
- This is a Dicoogle plugin to support the storage of files over IPFS.☆14Updated 2 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- Leaf Clinical Data Explorer☆97Updated 2 months ago
- HMTL & Javascript for the front end for the SNOMED CT Browser.☆95Updated last month
- Python library for work with BioCreative files☆13Updated 7 years ago
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆110Updated last month
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆48Updated 2 years ago
- Oncology Working Group Repository☆58Updated this week
- A near real-time named-entity recognizer☆62Updated 5 months ago
- A Research Exploration System☆17Updated 3 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated 2 years ago
- Data Ingestion and Harmonization☆46Updated 3 months ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18Updated 7 months ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- General tutorials for the setup and use of MedCAT.☆41Updated 7 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 4 months ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 7 months ago
- Running MedCAT as a RESTful web service☆21Updated 6 months ago
- The i2b2 data repository☆45Updated 2 weeks ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆73Updated 3 weeks ago
- Common clinical models in the forms of openEHR archetypes and GDL guidelines☆37Updated last year