bioinformatics-ua / BIcenter
A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.
☆16Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BIcenter
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆26Updated 3 years ago
- A genomics-proteomics toolkit☆46Updated last year
- Workflow Management for Biomedical exploration☆30Updated 6 years ago
- LaTeX template for theses at University of Aveiro☆14Updated 3 weeks ago
- ☆14Updated last year
- Dashboards showing intrinsic meta data for the OMOP-CDM databases in the EHDEN data network☆13Updated 5 months ago
- This is a Dicoogle plugin to support the storage of files over IPFS.☆14Updated 11 months ago
- Semantic Web Services Integration for Biomedical Applications☆12Updated 7 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- GenericCDSS is a web-based application, which provides the main dashboard where professionals (e.g, practitioners, nurses) can follow all…☆40Updated 5 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆37Updated 2 months ago
- A turnkey solution for joining federated research networks.☆11Updated this week
- A tool to infer metagenomic sample composition☆21Updated last year
- Repository for development of the genomic module of the CDM.☆19Updated 5 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆84Updated last year
- PhenoTagger☆54Updated 9 months ago
- Course materials for OHDSI ETL tutorial☆45Updated last month
- Minimal Common Oncology Data Elements Implementation Guide☆15Updated this week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- Resources for users and developers of Dicoogle☆17Updated last week
- Data Ingestion and Harmonization☆42Updated last year
- ☆15Updated last year
- Identification of Human Phenotype Entities☆10Updated 6 years ago
- FHIR Ontop OMOP Implementation☆16Updated 6 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- Oncology Working Group Repository☆56Updated 4 months ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago
- Python library for work with BioCreative files☆12Updated 6 years ago