bioinformatics-ua / BIcenter
A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.
☆16Updated 2 years ago
Alternatives and similar repositories for BIcenter:
Users that are interested in BIcenter are comparing it to the libraries listed below
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆26Updated 3 years ago
- A genomics-proteomics toolkit☆46Updated last year
- Workflow Management for Biomedical exploration☆30Updated 6 years ago
- LaTeX template for theses at University of Aveiro☆14Updated 2 weeks ago
- This is a Dicoogle plugin to support the storage of files over IPFS.☆14Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Repository for development of the genomic module of the CDM.☆20Updated 5 years ago
- A turnkey solution for joining federated research networks.☆12Updated this week
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆20Updated 2 months ago
- GenericCDSS is a web-based application, which provides the main dashboard where professionals (e.g, practitioners, nurses) can follow all…☆41Updated 6 years ago
- ☆14Updated last year
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆60Updated 2 years ago
- loinc2hpo Annotation Data☆24Updated 2 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 2 months ago
- Dashboards showing intrinsic meta data for the OMOP-CDM databases in the EHDEN data network☆13Updated 8 months ago
- A tool to infer metagenomic sample composition☆21Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Course materials for OHDSI ETL tutorial☆45Updated 3 months ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆63Updated last month
- A streaming and non-blocking API for reading and processing DICOM data☆33Updated 5 months ago
- 🔥 FHIR 101 - A Practical Guide☆39Updated 4 years ago
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆37Updated 5 months ago
- A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.☆11Updated last year
- Leaf Clinical Data Explorer☆90Updated 3 months ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- WHO Antenatal Care Guidelines IG☆22Updated 5 months ago
- i2b2 server source code☆37Updated last month
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆30Updated last year
- ☆21Updated 2 months ago