bioinformatics-ua / taskaLinks
Workflow Management for Biomedical exploration
☆30Updated 7 years ago
Alternatives and similar repositories for taska
Users that are interested in taska are comparing it to the libraries listed below
Sorting:
- A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.☆17Updated 3 years ago
- A genomics-proteomics toolkit☆48Updated 2 years ago
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Updated 4 years ago
- phenol: Phenotype ontology library☆25Updated last week
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 weeks ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Repository for development of the genomic module of the CDM.☆23Updated 6 years ago
- Data Standards Hackathon for NGS based typing.☆14Updated 3 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 4 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Updated 3 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆82Updated 2 weeks ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- loinc2hpo Annotation Data☆26Updated 3 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- Search public databases for given genotypic information☆11Updated 7 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- A near real-time named-entity recognizer☆62Updated 5 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- ☆26Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 5 months ago
- ☆24Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last week
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year