bioinformatics-ua / taskaLinks
Workflow Management for Biomedical exploration
☆30Updated 7 years ago
Alternatives and similar repositories for taska
Users that are interested in taska are comparing it to the libraries listed below
Sorting:
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Updated 4 years ago
- A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.☆17Updated 3 years ago
- A genomics-proteomics toolkit☆48Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- phenol: Phenotype ontology library☆24Updated last month
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- loinc2hpo Annotation Data☆25Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated 3 months ago
- PhenoTagger☆64Updated last year
- Semantic query and text mining tool☆21Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- Semantic Web Services Integration for Biomedical Applications☆12Updated 8 years ago
- ☆24Updated 4 years ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆81Updated last month
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- A near real-time named-entity recognizer☆62Updated 4 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- Repository for development of the genomic module of the CDM.☆23Updated 6 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆37Updated 2 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- ☆55Updated 5 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 6 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 4 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆32Updated last year
- R package with netDx software and data for examples☆12Updated 2 years ago