bioinformatics-ua / taskaLinks
Workflow Management for Biomedical exploration
☆30Updated 6 years ago
Alternatives and similar repositories for taska
Users that are interested in taska are comparing it to the libraries listed below
Sorting:
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Updated 4 years ago
- A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.☆17Updated 3 years ago
- A genomics-proteomics toolkit☆48Updated last year
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- Semantic Web Services Integration for Biomedical Applications☆12Updated 8 years ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 5 months ago
- phenol: Phenotype ontology library☆24Updated this week
- Semantic query and text mining tool☆21Updated last year
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- ☆24Updated 4 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆81Updated this week
- loinc2hpo Annotation Data☆25Updated 3 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆37Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- Services and guidelines for normalizing drug and other therapy terms☆13Updated last week
- MIABIS main project page and documentation repository☆13Updated 10 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 2 months ago
- Transform the OMOP model to graph model☆24Updated 9 months ago
- Public release of the DeepPhe analytic software☆30Updated last month
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year
- OntoBrowser is a web-based application for managing ontologies☆43Updated 2 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 3 months ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated this week