bioinformatics-ua / taskaLinks
Workflow Management for Biomedical exploration
☆30Updated 7 years ago
Alternatives and similar repositories for taska
Users that are interested in taska are comparing it to the libraries listed below
Sorting:
- A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.☆17Updated 3 years ago
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Updated 4 years ago
- A genomics-proteomics toolkit☆48Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 9 years ago
- Repository for development of the genomic module of the CDM.☆24Updated 6 years ago
- Search public databases for given genotypic information☆11Updated 7 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- NCATS Biomedical Translator Reasoners Standard API☆40Updated 2 weeks ago
- phenol: Phenotype ontology library☆25Updated last month
- ☆26Updated 5 years ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 months ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- Use Amazon Comprehend Medical to extract medical insight from notes inside the OMOP Common Data Model☆14Updated 6 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29Updated 4 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 8 months ago
- CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers☆12Updated 7 years ago
- MIABIS main project page and documentation repository☆13Updated 10 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Updated 3 years ago
- Semantic query and text mining tool☆21Updated 2 years ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Updated 2 years ago
- The Gene Ontology Helpdesk☆16Updated 2 weeks ago