cobilab / gtoView external linksLinks
A genomics-proteomics toolkit
☆48Oct 18, 2023Updated 2 years ago
Alternatives and similar repositories for gto
Users that are interested in gto are comparing it to the libraries listed below
Sorting:
- Workflow Management for Biomedical exploration☆30Nov 8, 2018Updated 7 years ago
- A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.☆17Apr 13, 2022Updated 3 years ago
- Extracting Patients' information from clinical notes and export them to an OMOP CDM database.☆27Jul 14, 2021Updated 4 years ago
- GenericCDSS is a web-based application, which provides the main dashboard where professionals (e.g, practitioners, nurses) can follow all…☆42Dec 18, 2018Updated 7 years ago
- ☆14Nov 17, 2025Updated 2 months ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- A tool to infer metagenomic sample composition☆20Oct 10, 2023Updated 2 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Jul 3, 2025Updated 7 months ago
- A secure encryption tool for genomic data☆62Apr 14, 2024Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Mar 8, 2023Updated 2 years ago
- ☆23Jan 22, 2026Updated 3 weeks ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- LaTeX template for theses at University of Aveiro☆24Jun 17, 2025Updated 7 months ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- A nextflow pipeline for calling exome CNVs☆13Updated this week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 9 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 4 months ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆12Feb 6, 2026Updated last week
- ☆12Sep 11, 2025Updated 5 months ago
- Curated list of resources for variant prioritization☆12Nov 18, 2025Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 weeks ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- NiPTUNE. A Python library for NIPT analyses.☆12Nov 22, 2021Updated 4 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated last month
- ☆14Sep 11, 2023Updated 2 years ago
- Dashboards showing intrinsic meta data for the OMOP-CDM databases in the EHDEN data network☆14May 28, 2024Updated last year
- ☆14Oct 3, 2017Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- An efficient DNA sequence compressor using Neural Networks☆15Jan 25, 2023Updated 3 years ago
- do some exercise☆14Dec 2, 2025Updated 2 months ago
- This is a Dicoogle plugin to support the storage of files over IPFS.☆14Nov 27, 2023Updated 2 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year