cobilab / gtoLinks
A genomics-proteomics toolkit
☆48Updated last year
Alternatives and similar repositories for gto
Users that are interested in gto are comparing it to the libraries listed below
Sorting:
- Call regions of homozygosity and make tentative UPD calls☆12Updated 3 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- analysis pipeline for CODEC data☆12Updated 4 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Updated 10 months ago
- A fork of the project Excavator2 from sourceforge.☆10Updated 8 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆19Updated last month
- ☆14Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 8 years ago
- Find and visualize rearrangements in DNA sequences☆54Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆12Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- NGS duplicate marking☆19Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Removing PCR duplicates for sequencing reads.☆14Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆22Updated 3 months ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated last year