Alternatives and similar repositories for gto

Users that are interested in gto are comparing it to the libraries listed below

• cobilab / falcon
  A tool to infer metagenomic sample composition
  ☆21Updated last year
• matheuscburger / Excavator2
  A fork of the project Excavator2 from sourceforge.
  ☆10Updated 8 years ago
• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• HaoKeLab / ensembleCNV
  ☆19Updated 3 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 4 months ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• broadinstitute / CODECsuite
  analysis pipeline for CODEC data
  ☆11Updated last month
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 11 months ago
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 5 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• statgen / bravo
  Deprecated. See new version: https://github.com/statgen/bravo_api - BRowse All Variants Online
  ☆9Updated 3 years ago
• reiterlab / ctdna
  Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
  ☆12Updated 4 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• dnil / rhocall
  Call regions of homozygosity and make tentative UPD calls
  ☆11Updated 2 weeks ago
• viromelab / tracespipe
  Reconstruction and analysis of viral and host genomes at multi-organ level
  ☆22Updated last week
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• GeneDx / txt2hpo
  Python library for extracting HPO encoded phenotypes from text
  ☆30Updated last year
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆18Updated last year
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆58Updated last year
• talkowski-lab / rCNV2
  Aggregation and analyses of rare CNVs across diseases
  ☆14Updated 2 years ago
• heiniglab / DeepSom
  A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal
  ☆11Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• andrej-fischer / EMu
  An Expectation-Maximization algorithm to infer mutational signatures
  ☆25Updated 8 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• guigolab / LyRic
  Long RNA-seq analysis workflow
  ☆18Updated 7 months ago
• robertopreste / HmtNote
  Human mitochondrial variants annotation using HmtVar.
  ☆18Updated last year
• marbl / seqrequester
  A tool for summarizing, extracting, generating and modifying DNA sequences.
  ☆23Updated 6 months ago
• genomics-dev / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆12Updated 5 years ago