drivendataorg / snomed-ct-entity-linking-runtimeLinks
Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData
☆14Updated last year
Alternatives and similar repositories for snomed-ct-entity-linking-runtime
Users that are interested in snomed-ct-entity-linking-runtime are comparing it to the libraries listed below
Sorting:
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Basic entity linker for the SNOMED EL Challenge☆13Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- ☆23Updated 3 years ago
- General tutorials for the setup and use of MedCAT.☆40Updated 6 months ago
- ☆27Updated 6 months ago
- ETL Tool for converting datasets to OMOP CDM☆34Updated 3 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT …☆15Updated 2 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆54Updated this week
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Updated 2 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- ☆66Updated 4 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- ☆29Updated 4 years ago
- Transform the OMOP model to graph model☆27Updated 11 months ago
- jayetri / DrugEHRQA-A-Question-Answering-Dataset-on-Structured-and-Unstructured-Electronic-Health-Records☆10Updated 3 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 11 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Code repository for "Generative Large Language Models are Poor Medical Coders: A Benchmarking Analysis of Medical Code Querying"☆13Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆67Updated 5 months ago
- Robust de-identification of medical notes using transformer architectures☆56Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- Official repository of "EHR-SeqSQL : A Sequential Text-to-SQL Dataset For Interactively Exploring Electronic Health Records" (ACL 2024 Fi…☆16Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84Updated 6 months ago