drivendataorg / snomed-ct-entity-linking-runtimeLinks
Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData
☆14Updated last year
Alternatives and similar repositories for snomed-ct-entity-linking-runtime
Users that are interested in snomed-ct-entity-linking-runtime are comparing it to the libraries listed below
Sorting:
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Basic entity linker for the SNOMED EL Challenge☆13Updated last year
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆45Updated 2 weeks ago
- ☆23Updated 2 years ago
- General tutorials for the setup and use of MedCAT.☆38Updated 2 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆39Updated last year
- ☆25Updated last month
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆83Updated 2 weeks ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT …☆14Updated 2 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- ☆66Updated 4 years ago
- FHIR Ontop OMOP Implementation☆20Updated last year
- Streamlined Data Mapping to OMOP☆19Updated this week
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 6 months ago
- ☆55Updated 5 years ago
- ☆26Updated 3 weeks ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆71Updated last year
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆37Updated last year
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆22Updated 3 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 5 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 3 months ago