CogStack / MedCATservice
Running MedCAT as a RESTful web service
☆17Updated last month
Related projects ⓘ
Alternatives and complementary repositories for MedCATservice
- General tutorials for the setup and use of MedCAT.☆31Updated last month
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- Winners of the SNOMED CT Entity Linking Challenge☆25Updated 7 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 6 months ago
- ☆51Updated 4 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated 10 months ago
- ☆63Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated this week
- ☆12Updated this week
- A near real-time named-entity recognizer☆59Updated 5 months ago
- Open source clinical text de-identification☆112Updated 3 months ago
- A python package for removing duplicate text in clinical notes or other documents☆34Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆51Updated last month
- Semantic query and text mining tool☆22Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆27Updated 7 years ago
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆78Updated 5 months ago
- all scripts used in gatortron project☆111Updated last year
- ☆21Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 3 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆36Updated 8 months ago
- Mapping the MIMIC-III database to the OMOP schema☆128Updated 8 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆71Updated last year
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆11Updated 5 months ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆33Updated this week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆39Updated 10 months ago
- Python module to parse UMLS source files☆19Updated last year
- A simple python library for ICD-10-CM codes☆57Updated 8 months ago