CogStack / MedCATservice
Running MedCAT as a RESTful web service
☆16Updated last month
Related projects: ⓘ
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆69Updated last week
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- ☆11Updated 3 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated 8 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆24Updated 5 months ago
- A Serverless Text Annotation Tool for Corpus Development☆50Updated 8 months ago
- General tutorials for the setup and use of MedCAT.☆30Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆61Updated 2 weeks ago
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆46Updated this week
- ☆60Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆26Updated 3 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆32Updated 6 months ago
- A near real-time named-entity recognizer☆58Updated 3 months ago
- Public release of the DeepPhe analytic software☆30Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆34Updated 4 years ago
- ☆51Updated 4 years ago
- Open source clinical text de-identification☆107Updated last month
- A simple python library for ICD-10-CM codes☆52Updated 6 months ago
- Mapping the MIMIC-III database to the OMOP schema☆125Updated 6 months ago
- clinical free text de-identification software☆41Updated 5 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆62Updated last month
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆33Updated 5 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆26Updated 6 years ago
- A generator of synthetic psychiatric notes.☆16Updated 4 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆66Updated last year
- ☆21Updated last year
- Python module to parse UMLS source files☆18Updated last year
- FHIR to pandas dataframe for data analytics, AI and ML!☆32Updated this week
- Transformers for Clinical NLP☆21Updated last week