ckbjimmy / clnegLinks
Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
☆21Updated 5 years ago
Alternatives and similar repositories for clneg
Users that are interested in clneg are comparing it to the libraries listed below
Sorting:
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- ☆38Updated 3 years ago
- ☆101Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆28Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆130Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- ☆55Updated 5 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- ☆67Updated 3 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Updated 2 years ago
- Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…☆55Updated 8 years ago
- ☆98Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 5 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- Weakly supervised medical named entity classification☆72Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 months ago
- Spacy pipeline object for extracting values that correspond to a named entity (e.g., birth dates, account numbers, laboratory results)☆55Updated 3 years ago
- ☆221Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Machine reading comprehension on clinical case reports☆151Updated 5 months ago
- Clinical Concept Extraction with Contextual Word Embedding☆41Updated 5 years ago
- ☆23Updated 3 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆21Updated 6 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆109Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago