Alternatives and similar repositories for PyRuSH:

Users that are interested in PyRuSH are comparing it to the libraries listed below

• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 9 months ago
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆14Updated 2 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆28Updated 7 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• simonlevine / clinical-longformer
  ☆38Updated 2 years ago
• medspacy / sectionizer
  A rule-based Python module for spitting documents into sections.
  ☆12Updated 4 years ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆99Updated 9 months ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆17Updated 10 months ago
• beamandrew / cui2vec
  ☆52Updated 4 years ago
• Melbourne-BMDS / mimic34md2020_materials
  ☆22Updated 2 years ago
• ckbjimmy / clneg
  Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
  ☆21Updated 4 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆64Updated 6 months ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆42Updated last year
• som-shahlab / ehr-rwe
  Weak supervision methods for extracting real world evidence from EHRs
  ☆33Updated 4 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 8 months ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆122Updated 6 months ago
• chapmanbe / pyConTextNLP
  ☆98Updated last year
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆131Updated 11 months ago
• lisavirginia / clinical-abbreviations
  ☆64Updated 3 years ago
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆107Updated 10 months ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 4 months ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆42Updated last month
• asappresearch / clip
  ☆28Updated 3 years ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆60Updated 2 years ago
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆29Updated 10 months ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 3 months ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆74Updated last year
• andrewwlong / odsc_workshop
  Clinical NLP workshop for ODSC
  ☆39Updated 5 years ago