jianlins / PyRuSHLinks
init
☆12Updated 7 months ago
Alternatives and similar repositories for PyRuSH
Users that are interested in PyRuSH are comparing it to the libraries listed below
Sorting:
- ☆55Updated 5 years ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆15Updated 3 years ago
- ☆38Updated 3 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- ☆64Updated 4 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- ☆98Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆137Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆69Updated this week
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- ☆98Updated 3 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- System for Medical Concept Extraction and Linking☆408Updated 11 months ago
- ☆18Updated last year
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- ☆152Updated last year
- Python library for hierarchy of ICD9 Codes☆105Updated 6 years ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- ☆15Updated 3 weeks ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- Open source clinical text de-identification☆131Updated 10 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago