jianlins / PyRuSH
init
☆11Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for PyRuSH
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆12Updated 2 years ago
- ☆51Updated 4 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆96Updated 6 months ago
- ☆17Updated 7 months ago
- ☆38Updated 2 years ago
- ☆63Updated 3 years ago
- ☆98Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 6 months ago
- ☆95Updated 2 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆39Updated 10 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 3 months ago
- A near real-time named-entity recognizer☆59Updated 5 months ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- ☆27Updated 3 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆27Updated 7 years ago
- Sample code that demonstrates the use of the NCBO REST services☆40Updated 10 months ago
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- ☆21Updated last year
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- System for Medical Concept Extraction and Linking☆379Updated 3 months ago
- ☆56Updated last year
- Python library for hierarchy of ICD9 Codes☆102Updated 5 years ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- Mapping the MIMIC-III database to the OMOP schema☆128Updated 8 months ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆73Updated last year
- Weakly supervised medical named entity classification☆70Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆24Updated last year