Alternatives and similar repositories for ehr-relation-extraction

Users that are interested in ehr-relation-extraction are comparing it to the libraries listed below

• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆129Updated last year
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆76Updated 2 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆152Updated last year
• gmichalo / UmlsBERT
  ☆99Updated 3 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• acadTags / Explainable-Automated-Medical-Coding
  Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
  ☆61Updated 3 years ago
• justinphan3110 / SciFive
  SciFive: a text-text transformer model for biomedical literature
  ☆96Updated last year
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆80Updated 3 years ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆145Updated 7 months ago
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆170Updated 2 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆83Updated 2 weeks ago
• dmis-lab / bioasq-biobert
  Pre-trained Language Model for Biomedical Question Answering
  ☆123Updated 2 years ago
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆40Updated 5 years ago
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆196Updated 2 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated last year
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆71Updated last year
• dchang56 / snomed_kge
  ☆30Updated 4 years ago
• lcampillos / Medical-NER
  Notebook for BERT medical named entity recognition
  ☆41Updated 2 years ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 5 months ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• kbogas / medknow
  Medical Relations and Entities Extraction
  ☆37Updated 3 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• kormilitzin / med7
  ☆219Updated 7 months ago
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆162Updated 4 years ago
• GanjinZero / ICD-MSMN
  Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]
  ☆54Updated 3 years ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆296Updated 3 years ago
• ckbjimmy / clneg
  Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
  ☆21Updated 5 years ago
• lindvalllab / clinicalXLNet
  Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
  ☆50Updated 3 years ago