Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
☆34Jul 10, 2024Updated last year
Alternatives and similar repositories for scDeepCluster_pytorch
Users that are interested in scDeepCluster_pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scDCC: Single Cell Deep Constrained Clustering☆43Jul 10, 2024Updated last year
- scDeepCluster for Single Cell RNA-seq data☆105Jul 10, 2024Updated last year
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆29Jul 20, 2020Updated 5 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated last year
- ☆24Nov 6, 2021Updated 4 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022☆25Feb 5, 2023Updated 3 years ago
- Simple scVI implementation☆12Mar 16, 2026Updated last week
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆17Feb 5, 2023Updated 3 years ago
- Deep count autoencoder for denoising scRNA-seq data☆272Mar 21, 2024Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- ☆43Jun 11, 2022Updated 3 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- ☆18Jul 31, 2021Updated 4 years ago
- single-cell graph autoencoder☆25Oct 14, 2021Updated 4 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- The official source code for "Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning", accepted at Bioinfo…☆22Jul 14, 2023Updated 2 years ago
- ☆20May 20, 2021Updated 4 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated last year
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆35Nov 30, 2022Updated 3 years ago
- Single Cell Multi-omics deep clustering☆30Jul 1, 2025Updated 8 months ago
- Single-Cell Multimodal Prediction via Transformer☆28Feb 7, 2024Updated 2 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated 7 months ago
- Residual Component Analysis☆10Jul 4, 2017Updated 8 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 4 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆385Updated this week
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Jan 30, 2023Updated 3 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Single Cell Consensus Clustering with Speed☆21Dec 12, 2022Updated 3 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Sep 21, 2017Updated 8 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- single-cell RNA-seq Clustering via Deep Cut-informed Graph☆14Nov 23, 2025Updated 4 months ago
- Generative adversarial networks for single-cell RNA-seq imputation☆40Jul 20, 2020Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year