RNA-seq analysis
☆27Oct 30, 2021Updated 4 years ago
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Feb 28, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆33Nov 3, 2025Updated 10 months ago
- ☆12Sep 1, 2022Updated 4 years ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- ☆11Mar 14, 2026Updated 6 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- ☆12Sep 28, 2021Updated 4 years ago
- The cattle Genotype-Tissue Expression atlas v1☆30Mar 14, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆14Jul 27, 2019Updated 7 years ago
- ☆20Oct 4, 2023Updated 2 years ago
- ☆37Aug 8, 2025Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 10 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆25Mar 5, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository☆10Oct 23, 2024Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- ☆24Jul 29, 2025Updated last year
- Some script and skills in Population Genetic analyzes☆26Jul 6, 2024Updated 2 years ago
- Portable database of microhaplotype marker and allele frequency data☆13Oct 2, 2025Updated 11 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated 3 months ago
- ☆10Apr 10, 2016Updated 10 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- ☆10Mar 4, 2025Updated last year
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 9 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago