Alternatives and similar repositories for RNA-seq

Users that are interested in RNA-seq are comparing it to the libraries listed below

• ZhikunWu / Bioinformatic-resources
  ☆20Updated 5 years ago
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆25Updated last year
• Tong-Chen / Bioinfo_course_python
  ☆31Updated last month
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆30Updated 3 weeks ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 2 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆24Updated last year
• BioinfoUNIBA / REDItools2
  ☆60Updated 5 months ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated last week
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated 11 months ago
• liulifenyf / TSPTFBS
  trans-species prediction of TFBS in plants
  ☆14Updated 4 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• kernco / functional-annotation
  Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
  ☆26Updated 3 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 3 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆52Updated 2 years ago
• cambiotraining / chipseq
  ChIP-seq and ATAC-seq analysis
  ☆13Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆49Updated 6 years ago
• Tong-Chen / Bioinfo_course_R
  ☆38Updated last month
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 6 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated 2 weeks ago
• ShawnWx2019 / MetMiner
  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
  ☆17Updated last year
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆62Updated 2 years ago
• ylipacbio / IsoSeq3
  IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆19Updated 7 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 8 months ago
• ZhijunBioinf / Teaching_GenomicLab
  基因组学实验
  ☆14Updated 3 years ago