RNA-seq analysis
☆28Oct 30, 2021Updated 4 years ago
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆29Feb 28, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆32Nov 3, 2025Updated 8 months ago
- ☆11Sep 1, 2022Updated 3 years ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 2 years ago
- ☆11Mar 14, 2026Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- ☆12Sep 28, 2021Updated 4 years ago
- The cattle Genotype-Tissue Expression atlas v1☆29Mar 14, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- ☆20Oct 4, 2023Updated 2 years ago
- ☆37Aug 8, 2025Updated 11 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository☆10Oct 23, 2024Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- ☆24Jul 29, 2025Updated 11 months ago
- 群体遗传学分析中用到的script和skill等☆26Jul 6, 2024Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 9 months ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 9 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated last month
- ☆10Apr 10, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆14Dec 16, 2025Updated 7 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago