Alternatives and similar repositories for RNA-seq:

Users that are interested in RNA-seq are comparing it to the libraries listed below

• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆54Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆19Updated 5 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 7 months ago
• BioinfoUNIBA / REDItools2
  ☆54Updated 3 years ago
• xryanglab / RiboCode
  release version
  ☆51Updated 2 years ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆85Updated 5 months ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆58Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆63Updated 3 months ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆45Updated last year
• ZhikunWu / Bioinformatic-resources
  ☆19Updated 4 years ago
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆29Updated 5 years ago
• YuSugihara / MutMap
  MutMap pipeline to identify causative mutations responsible for a phenotype
  ☆52Updated 3 weeks ago
• www-bioinfo-org / CNCI
  Coding-Non-Coding Index (CNCI)
  ☆39Updated 6 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated 3 weeks ago
• ay-lab / fithic
  Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…
  ☆81Updated 2 years ago
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆23Updated 8 months ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆56Updated 4 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆50Updated 2 years ago
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆66Updated 5 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆31Updated last month
• ChaoXu1997 / RNAseqTool
  A Shiny App for Interactive RNAseq Analysis and Visualization
  ☆12Updated 6 months ago
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆65Updated 6 years ago