Software for FLT3-ITD detection and MRD monitoring assay
☆14Jul 22, 2022Updated 3 years ago
Alternatives and similar repositories for getitd
Users that are interested in getitd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 4 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 11 months ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- Nextflow pipelines to process long read ONT and/or pacbio HiFi data☆18May 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated this week
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 6 months ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Research pipeline for exploring clinically relevant genomic variants☆17Jun 2, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 3 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 5 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated last month
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 11 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 weeks ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 8 months ago
- Lui is a lua MVVM framework based on IUP gui library and Lockout.lua (Knockout port)☆11May 5, 2013Updated 13 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆29May 7, 2026Updated last month
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆25Apr 1, 2026Updated 2 months ago
- an R package collection for topological data analysis☆17Apr 16, 2026Updated last month
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆19Feb 11, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lua module to emulate a Lua Terminal in a IUP toolkit textbox to easily embed in any IUP application☆16Jul 29, 2024Updated last year
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 2 months ago
- Set of useful lua functions for manipulating tables.☆12Jan 22, 2020Updated 6 years ago
- Splicing Prediction Pipeline☆14Aug 12, 2023Updated 2 years ago
- automatic update Clinvar db for ANNOVAR☆10Jun 8, 2026Updated last week
- ☆17Jan 16, 2026Updated 5 months ago
- An AI-powered Mattermost ChatGPT chatbot that utilizes the OpenAI API to provide helpful, contextual responses to user messages, extract …☆17Jan 7, 2026Updated 5 months ago