Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."
☆22Oct 23, 2025Updated 10 months ago
Alternatives and similar repositories for dbp_design
Users that are interested in dbp_design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 3, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last month
- The package of ProBuilder from Longxing Cao lab☆26Jan 19, 2026Updated 8 months ago
- Free Parametrization for Small Molecules☆66Jun 30, 2026Updated 2 months ago
- ☆91Jan 23, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆98Oct 23, 2025Updated 10 months ago
- ☆10Jan 19, 2019Updated 7 years ago
- Synthesizable 3D Molecule Generation via Joint Reaction and Coordinate Modeling☆32Jun 3, 2026Updated 3 months ago
- protein docking stuff☆57Apr 2, 2026Updated 5 months ago
- ☆73Apr 8, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 4 months ago
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Aug 25, 2026Updated 3 weeks ago
- ☆15May 29, 2024Updated 2 years ago
- All-atom generative protein design using SE(3) flow matching☆28Feb 3, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inference code for RFdiffusion2☆443Apr 3, 2026Updated 5 months ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆134Oct 24, 2025Updated 10 months ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆35Aug 23, 2024Updated 2 years ago
- ☆20Nov 24, 2025Updated 9 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆51Nov 4, 2025Updated 10 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated 3 weeks ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- OVO, an open-source ecosystem for de novo protein design☆142Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Diffusion model based protein-ligand flexible docking method☆121Oct 30, 2024Updated last year
- Coarse-grained and Multi-dimensional Data-driven molecular generation (CMD-GEN). This framework bridges three-dimensional ligand-protein …☆18Sep 13, 2025Updated last year
- Utility to run RosettaCommons tools☆15May 5, 2026Updated 4 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆49Oct 28, 2023Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆275Jul 24, 2025Updated last year
- Injecting watermarks to protein sequences for privacy protection in biosecurity☆10Oct 1, 2024Updated last year
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆310Sep 23, 2025Updated 11 months ago
- Open, MIT-licensed food, nutrition & agricultural science research skills for Claude Code, Codex, MiniMax Agent, OpenClaw & Grok Build — …☆32Aug 31, 2026Updated 2 weeks ago
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- MSU ProFlex (formerly called FIRST) predicts the rigid and flexible regions in a protein structure, given a Protein Data Bank (PDB) file …☆10Apr 16, 2022Updated 4 years ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆24May 19, 2025Updated last year
- ☆36Jul 7, 2026Updated 2 months ago
- ☆17May 18, 2026Updated 4 months ago
- Code for deep learning guided design of dynamic proteins☆35Jul 16, 2024Updated 2 years ago