Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.
☆26Jun 23, 2022Updated 3 years ago
Alternatives and similar repositories for pdb-tools
Users that are interested in pdb-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a library for massive analyses of internal voids in biomolecules and ligand transport through them☆10May 19, 2026Updated last week
- Collection of Python scripts to setup and run simulations with OpenMM☆17May 22, 2020Updated 6 years ago
- ☆15Oct 5, 2024Updated last year
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- An open-source library for the analysis of protein interactions.☆35Dec 5, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Protein Origami via Genetic Fusions☆18Sep 19, 2022Updated 3 years ago
- ☆11Sep 17, 2024Updated last year
- PyMOL Plugin for displaying polar contacts☆20Mar 11, 2019Updated 7 years ago
- ☆16Apr 10, 2019Updated 7 years ago
- ☆52Apr 22, 2026Updated last month
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆19Mar 31, 2021Updated 5 years ago
- A package for MD, Docking and Machine learning drug discovery pipeline☆46Aug 30, 2020Updated 5 years ago
- a quick primer on making prettier (and more impactful) plots☆14Sep 27, 2015Updated 10 years ago
- Fraser Lab website☆40Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Mar 31, 2026Updated last month
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 3 months ago
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- ☆16Jun 11, 2021Updated 4 years ago
- A mobile QML app for interfacing with the Galaxy API☆14Dec 7, 2015Updated 10 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 4 years ago
- Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desm…☆23Apr 14, 2026Updated last month
- Code and resources for the EPSRC BioSimSpace project.☆78Sep 1, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆75Aug 3, 2023Updated 2 years ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated 11 months ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Tinker-FFE: Molecular Engineering GUI for Tinker☆11Feb 4, 2026Updated 3 months ago
- ☆12Mar 21, 2026Updated 2 months ago
- ☆22Feb 25, 2025Updated last year
- Integrating Molecular Simulation and Experimental Data☆27Sep 19, 2021Updated 4 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆23Jul 14, 2023Updated 2 years ago
- Scripts used for virtual screening of small molecule inhibitors from ZINC database using Autodock Vina☆17Aug 25, 2014Updated 11 years ago
- Python package to facilitate the use of popular docking software☆17Jun 1, 2023Updated 2 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 9 months ago
- ☆18Apr 21, 2026Updated last month
- Script to check required packages for Schrödinger suite on Linux machine☆13Mar 23, 2026Updated 2 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago