Alternatives and similar repositories for pdb-tools

Users that are interested in pdb-tools are comparing it to the libraries listed below

• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 6 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆52Updated 9 months ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆31Updated 5 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 6 months ago
• PyMOL-Ross / Pymol-Tutorials
  ☆31Updated 4 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆28Updated 3 weeks ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆69Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• jcheongs / alphafold-multimer
  ☆31Updated 3 years ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆55Updated 3 months ago
• ncbi / SSDraw
  ☆85Updated last year
• janash / iqb-2024
  Notebooks and environment set up for IQB 2024 workshop - Python for Molecular Docking
  ☆67Updated 5 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆30Updated last year
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆80Updated 3 months ago
• elaspic / elaspic2
  Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…
  ☆21Updated 4 years ago
• DweipayanG / GROMACS-Protein-Ligand
  ☆49Updated 2 years ago
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆49Updated 5 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆59Updated 2 months ago
• mattarnoldbio / alphapickle
  ☆31Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• wendao / CAGE-Prox
  Computer aided proximal decaging as a universal strategy for temporal protein activation
  ☆23Updated last month
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 3 weeks ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago
• ullahsamee / Alphafold3-Fedora-install
  ☆10Updated 7 months ago