Alternatives and similar repositories for pdb-tools

Users that are interested in pdb-tools are comparing it to the libraries listed below

• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated 2 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated last month
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆34Updated 7 years ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆114Updated last year
• PapenfussLab / proteindj
  Official repository for the ProteinDJ protein design pipeline
  ☆66Updated this week
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆149Updated 3 weeks ago
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆82Updated 8 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆63Updated 3 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆120Updated 2 years ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 4 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆108Updated 3 weeks ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆55Updated last month
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆123Updated 2 weeks ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆74Updated 6 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• Jfeldman34 / AF3Complex
  ☆48Updated 4 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆61Updated 3 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆128Updated 6 months ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆31Updated 2 years ago
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆81Updated 3 years ago
• DweipayanG / GROMACS-Protein-Ligand
  ☆57Updated 2 years ago
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆67Updated last year
• carlocamilloni / Structural-Bioinformatics
  This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…
  ☆85Updated this week
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆127Updated 3 years ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆198Updated this week