cellcanvas / surforamaLinks
a tool for using surfaces to explore volumetric data in napari
☆18Updated 2 months ago
Alternatives and similar repositories for surforama
Users that are interested in surforama are comparing it to the libraries listed below
Sorting:
- Jupyter-based tool for membrane segmentation manipulation☆9Updated last week
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆25Updated 3 weeks ago
- A tool to support interactive machine learning for cryoET data☆12Updated 10 months ago
- SerialEM mdoc files as pandas dataframes☆13Updated 2 weeks ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Updated 4 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆18Updated last year
- membrane segmentation in 3D for cryo-ET☆79Updated 3 weeks ago
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Updated 3 weeks ago
- Singularity image for cryo-CARE☆33Updated 3 years ago
- ☆32Updated 2 years ago
- IMOD model files as pandas dataframes in Python☆11Updated 3 weeks ago
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆13Updated this week
- Scripts to make cryo-electron tomography a bit easier☆13Updated this week
- ☆10Updated last week
- PIP package of cryoCARE☆35Updated last year
- ☆19Updated 5 months ago
- A possible schema for cryoET geometry metadata☆10Updated this week
- automated on-the-fly tilt-series alignment☆10Updated 4 years ago
- ☆53Updated this week
- cryo-EM tomogram simulator☆26Updated 2 weeks ago
- Guide to python package development for scientists☆19Updated last month
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆36Updated last year
- ☆48Updated 10 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆27Updated 2 weeks ago
- GPU-accelerated template matching for cryo-ET☆43Updated last week
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆28Updated last month
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆17Updated last month
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆35Updated 11 months ago
- Miscellaneous scripts for processing cryo-ET data☆16Updated 4 months ago
- Parallel cryo electron tomography via beam image shift☆35Updated 2 weeks ago