cellcanvas / surforamaLinks
a tool for using surfaces to explore volumetric data in napari
☆19Updated 7 months ago
Alternatives and similar repositories for surforama
Users that are interested in surforama are comparing it to the libraries listed below
Sorting:
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆28Updated last month
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Updated 9 months ago
- A tool to support interactive machine learning for cryoET data☆12Updated last year
- SerialEM mdoc files as pandas dataframes☆14Updated 4 months ago
- membrane segmentation in 3D for cryo-ET☆84Updated 3 weeks ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19Updated last year
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Updated 4 months ago
- IMOD model files as pandas dataframes in Python☆11Updated 5 months ago
- Singularity image for cryo-CARE☆37Updated 3 years ago
- ☆33Updated 2 years ago
- Scripts to make cryo-electron tomography a bit easier☆14Updated 4 months ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆39Updated last year
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆14Updated last week
- cryo-EM tomogram simulator☆29Updated this week
- automated on-the-fly tilt-series alignment☆11Updated 4 years ago
- ☆50Updated last year
- PIP package of cryoCARE☆42Updated last year
- ☆19Updated 3 weeks ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆28Updated 5 months ago
- A possible schema for cryoET geometry metadata☆11Updated 4 months ago
- ☆10Updated last month
- GPU-accelerated template matching for cryo-ET☆48Updated last week
- ☆59Updated this week
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆19Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆28Updated last week
- Self-supervised deep learning framework for CryoET analysis☆17Updated last week
- Generates synthetic datasets for Cryo-Electron Tomography☆31Updated 3 months ago
- ☆23Updated last week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Updated 4 months ago
- Miscellaneous scripts for processing cryo-ET data☆18Updated 9 months ago