Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2
☆21May 30, 2022Updated 4 years ago
Alternatives and similar repositories for cld_docker
Users that are interested in cld_docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software for the multispecies design of CRISPR/Cas9 libraries☆38Oct 7, 2022Updated 3 years ago
- Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)☆20Apr 27, 2015Updated 11 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆108Aug 31, 2022Updated 4 years ago
- R package providing basic command line optional argument parsing☆12May 9, 2026Updated 3 months ago
- Create .mzML files through the R Console☆12Jun 14, 2026Updated 2 months ago
- Documentation for the Helium pedigree visualization software☆17Apr 3, 2024Updated 2 years ago
- Bloom Filter Benchmark for Heterogeneous Hardware.☆10May 19, 2019Updated 7 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- All source code of the crispor.org website☆90Updated this week
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆14Jun 24, 2026Updated 2 months ago
- R functions related to pedigrees☆14Sep 29, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆33Oct 16, 2020Updated 5 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Molecular visualization for MDAnalysis with MolecularNodes in Blender☆21Mar 30, 2025Updated last year
- ☆19Feb 15, 2024Updated 2 years ago
- Repository for the usage of Squidly.☆15Jul 22, 2026Updated last month
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 5 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 5 months ago
- A golang implementation of tf-idf aimed at highest performance on commodity hardware.☆13Jul 8, 2014Updated 12 years ago
- ☆13Sep 1, 2020Updated 5 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Molstar Stories Webapp☆22May 19, 2026Updated 3 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆48Jul 27, 2016Updated 10 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Dec 14, 2021Updated 4 years ago
- A Rust implementation of SSHash☆19Updated this week
- ☆23Jun 5, 2021Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Timehop for Facebook Groups on iOS sporting MVVM and ReactiveCocoa☆11Jul 8, 2014Updated 12 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago