boutroslab / cld_dockerLinks
Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2
☆21Updated 3 years ago
Alternatives and similar repositories for cld_docker
Users that are interested in cld_docker are comparing it to the libraries listed below
Sorting:
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 6 months ago
- A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence☆44Updated 3 years ago
- All source code of the crispor.org website☆87Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆98Updated 3 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- New version☆35Updated 9 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆119Updated 2 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆54Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated 6 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 3 weeks ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Fast and flexible ORF finder☆78Updated 4 years ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Public repository for ShapeMapper 2 releases☆41Updated last month
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated this week
- Analysis and Visualization of Ribosome Profiling Data☆31Updated 5 months ago
- *DEPRECATED* Job management for the Ensembl Genebuild pipeline☆63Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated last week
- microRNA profiling pipeline☆81Updated 4 years ago
- Making bioinformatics fun again☆74Updated 2 months ago
- What should perfect bioinformatic tools be like?☆146Updated 3 months ago