sunericd / dynamic-visualization-of-high-dimensional-dataLinks
Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional data" by Sun et al. (2022).
☆26Updated 2 years ago
Alternatives and similar repositories for dynamic-visualization-of-high-dimensional-data
Users that are interested in dynamic-visualization-of-high-dimensional-data are comparing it to the libraries listed below
Sorting:
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last week
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆30Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆39Updated 2 months ago
- External repo for the EFAAR benchmarking paper☆19Updated this week
- Evaluating batch correction methods for image-based cell profiling☆14Updated 5 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆32Updated last month
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated 2 years ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 3 weeks ago
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Functional and Learnable Cell dynamicS☆17Updated 3 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month
- Analysis workflow for investigating the structural context of PTMs☆11Updated last year
- Shiny app to easily create publishable plots for scientific papers☆34Updated 2 months ago
- ☆61Updated 5 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- ☆17Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 3 months ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated last year
- Arnie-based DegScore tool.☆25Updated 2 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆10Updated last week
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Generating biologically informed neural networks☆48Updated 4 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month
- Analysis platform for large-scale dose-dependent data☆25Updated last week