JIC-CSB / SLURM-cheat-sheetLinks
Cheat sheet for interacting with the SLURM scheulder
☆17Updated 8 years ago
Alternatives and similar repositories for SLURM-cheat-sheet
Users that are interested in SLURM-cheat-sheet are comparing it to the libraries listed below
Sorting:
- Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.☆579Updated 8 months ago
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆85Updated 2 years ago
- submit jobs to slurm with quick-and-dirty python☆95Updated 3 years ago
- JHU Thesis Template☆38Updated 7 years ago
- Docker images for deploying SGE (Son of Grid Engine) cluster☆23Updated 8 years ago
- GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging☆69Updated 6 months ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Updated 7 months ago
- ☆95Updated 6 years ago
- ☆22Updated 9 years ago
- Run Jupyter on Orchestra 2☆12Updated 3 years ago
- upload big files to Zenodo using cURL, jq and bash☆325Updated last year
- ☆14Updated 2 years ago
- All pairs search and sequence clustering☆98Updated 3 years ago
- A comprehensive and long list of things a modern scientist is supposed to know☆294Updated 4 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated 3 years ago
- A Python wrapper for the bioRxiv API.☆10Updated 4 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Minimal tutorial on packing and unpacking sequences in pytorch☆208Updated 7 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Updated 8 years ago
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆101Updated 2 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Updated 2 years ago
- Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment☆97Updated 4 years ago
- A fast and memory-efficient k-mer counter with GPU-support☆37Updated 5 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Updated 3 years ago
- a framework for training sequence-level deep learning networks☆397Updated last year
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Updated 5 years ago
- Cookiecutter for snakemake slurm profile☆134Updated last year
- TF MOtif Discovery from Importance SCOres☆163Updated last month