A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
☆15Sep 22, 2018Updated 7 years ago
Alternatives and similar repositories for kameris
Users that are interested in kameris are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆24May 7, 2025Updated 10 months ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Nov 6, 2025Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆20Mar 31, 2021Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 4 years ago
- An powered LLM Slack bot that uses an OpenAI API backend (LlamaCPP, Ollama, etc)☆13Mar 11, 2026Updated 2 weeks ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 8 months ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 3 weeks ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated 11 months ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- ☆20Apr 2, 2025Updated 11 months ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last month
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- REcombination BARcode detector.☆16Apr 2, 2024Updated last year
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 10 months ago
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 6 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- Alignment-free structure prediction using protein language models☆22Nov 2, 2022Updated 3 years ago
- Repository for general metagenomics Nextflow pipeline☆24Mar 10, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated 2 months ago
- ☆20Mar 28, 2024Updated last year
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 7 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave☆13Jul 15, 2019Updated 6 years ago