stemangiola / tidySingleCellExperimentLinks
Brings SingleCellExperiment objects to the tidyverse
☆36Updated 6 months ago
Alternatives and similar repositories for tidySingleCellExperiment
Users that are interested in tidySingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- Single-cell analysis with non-negative matrix factorization☆44Updated 8 months ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- Cell type pipes for R☆51Updated last year
- ☆16Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆64Updated this week
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated this week
- Brings SummarizedExperiment to the tidyverse☆26Updated last year
- ☆27Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 3 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 5 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Gene-level general linear mixed model☆21Updated 5 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- Collection of useful methods for single cell analysis☆14Updated 10 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 3 months ago
- ☆27Updated 4 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated 2 years ago