stemangiola / tidySingleCellExperimentLinks
Brings SingleCellExperiment objects to the tidyverse
☆36Updated 5 months ago
Alternatives and similar repositories for tidySingleCellExperiment
Users that are interested in tidySingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- ☆16Updated last year
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 2 weeks ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Cell type pipes for R☆51Updated last year
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- Brings SummarizedExperiment to the tidyverse☆26Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- ☆27Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 4 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- Shiny app for the analysis of single cell data☆26Updated 2 months ago
- ☆41Updated 4 years ago
- Annotated multivariate observation data in R☆47Updated last week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Normalize CITEseq Data☆65Updated last month
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago