A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
☆16Apr 25, 2023Updated 3 years ago
Alternatives and similar repositories for PeakDecoder
Users that are interested in PeakDecoder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- Mass spectral library manager☆14Apr 9, 2020Updated 6 years ago
- Nearest neighbor suspect spectral library for untargeted metabolomics.☆10Aug 25, 2023Updated 3 years ago
- High level functionality to support and simplify metabolomics data annotation.☆21Aug 5, 2026Updated 2 months ago
- ☆30Feb 9, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆41Oct 21, 2026Updated last week
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆17Oct 1, 2026Updated 3 weeks ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Software for the assignment of low weight molecular formulas from high-resolution mass spectra.☆12Oct 23, 2025Updated last year
- CoreMS is a comprehensive mass spectrometry software framework☆72Updated this week
- ☆13Jan 16, 2025Updated last year
- a Python library for generalized, low-level annotation of MS metabolomics☆14Oct 20, 2026Updated last week
- ☆14Apr 12, 2023Updated 3 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A computational tool for the prediction and identification of metabolites.☆17Aug 19, 2021Updated 5 years ago
- MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS☆16Jan 8, 2026Updated 9 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆58Apr 23, 2026Updated 6 months ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆29May 22, 2026Updated 5 months ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆16Jan 22, 2026Updated 9 months ago
- Deep-Learning-Based Multivariate Curve Resolution☆14Oct 14, 2021Updated 5 years ago
- Deep learning-based pseudo mass spectrometry imaging☆14Jul 2, 2022Updated 4 years ago
- GC/LC-MS data analysis for environmental science☆18Oct 9, 2026Updated 3 weeks ago
- Create .mzML files through the R Console☆12Jun 14, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆25Nov 11, 2024Updated last year
- Implementation of graph convolutional networks to predict chromatographic retention times.☆15Sep 7, 2021Updated 5 years ago
- GPU-Accelerated Cosine Similarity for Tandem Mass Spectrometry☆19Nov 4, 2025Updated 11 months ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆17Dec 6, 2023Updated 2 years ago
- PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.☆23Oct 5, 2026Updated 3 weeks ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆28Aug 14, 2026Updated 2 months ago
- User interface to reanalyze and explore all public data in Metabolomics Public Data☆12Oct 18, 2023Updated 3 years ago
- Rocker image for metabolomics data analysis☆14Oct 23, 2026Updated last week
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆20Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆30Jul 30, 2024Updated 2 years ago
- A "fairly fast" ISOtope PAttern Calculator for Python☆13Sep 27, 2023Updated 3 years ago
- ☆20Jul 12, 2023Updated 3 years ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 3 years ago
- ☆12Feb 5, 2024Updated 2 years ago
- R package for optimized LC-MS spectra processing☆31Sep 28, 2026Updated last month
- R Interface to the ClassyFire REST API☆15Aug 21, 2026Updated 2 months ago