An R package for non-targeted LC-MS metabolomics
☆20Oct 31, 2025Updated 6 months ago
Alternatives and similar repositories for notame
Users that are interested in notame are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- On-instrument and post-acquisition targeted feature extraction☆13Apr 24, 2026Updated 3 weeks ago
- Tool for reliability assessment of omics peprocessing☆11Jan 13, 2026Updated 4 months ago
- Rocker image for metabolomics data analysis☆13Oct 25, 2025Updated 6 months ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.☆25May 14, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆18Mar 26, 2026Updated last month
- R package for optimized LC-MS spectra processing☆29Updated this week
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, …☆17Feb 14, 2023Updated 3 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆14Apr 16, 2026Updated last month
- Code associated with the manuscript: Deep Neural Networks for Classification of LC-MS Spectral Peaks☆14Jan 11, 2021Updated 5 years ago
- Python library for large-scale targeted metabolomics.☆23Mar 2, 2026Updated 2 months ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Apr 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆33Aug 3, 2024Updated last year
- mzmine source code repository☆276May 14, 2026Updated last week
- Realtime quality control for mass spectrometry data acquisition☆22Updated this week
- Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline☆12Jul 6, 2023Updated 2 years ago
- Mass spectral library manager☆13Apr 9, 2020Updated 6 years ago
- This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis☆223Apr 22, 2026Updated 3 weeks ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆34Mar 23, 2021Updated 5 years ago
- Network mapping tool for metabolomics + data.☆55Feb 5, 2016Updated 10 years ago
- Tools for treatment high res mass spectrum of natural organic matter samples☆12Aug 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- bioinformatics for peter☆12Apr 8, 2025Updated last year
- Word2Vec based similarity measure of mass spectrometry data.☆84Nov 10, 2025Updated 6 months ago
- Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.☆17Feb 13, 2026Updated 3 months ago
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- Workflow solutions for mass-spectrometry based non-target analysis.☆74Updated this week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Jun 3, 2025Updated 11 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Sep 4, 2024Updated last year
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Nov 11, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nextflow-powered MS-DIAL☆13Mar 26, 2026Updated last month
- ☆28Nov 30, 2023Updated 2 years ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆61May 11, 2026Updated last week
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- asari, metabolomics data preprocessing☆62Updated this week
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- ☆11Apr 10, 2022Updated 4 years ago