Philipbear / BUDDY_Metabolomics

Related projects ⓘ

Alternatives and complementary repositories for BUDDY_Metabolomics

• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆39Updated last month
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆31Updated 3 weeks ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆13Updated last year
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆32Updated last year
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆20Updated 2 weeks ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated 7 months ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆15Updated 6 months ago
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆44Updated last year
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated 11 months ago
• HuanLab / BUDDY
  Bottom-up MS/MS interrogation & Experiment-specific global annotation
  ☆29Updated 2 months ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 4 months ago
• merlin-ms / awesome-mass-spectral-libraries
  ☆14Updated 6 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 3 years ago
• ZhuMSLab / DecoMetDIA
  ☆10Updated 2 years ago
• mmzdouc / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆29Updated 3 weeks ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• madeleineernst / pyMolNetEnhancer
  ☆18Updated last year
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆42Updated this week
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆18Updated this week
• bittremieux / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆22Updated last year
• bittremieux / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆26Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆27Updated 10 months ago
• eMetaboHUB / MS-CleanR
  ☆25Updated 11 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆28Updated 2 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated last month
• statisticalbiotechnology / diffacto
  ☆13Updated 7 months ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆10Updated 3 weeks ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆54Updated 9 months ago