A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.
☆10Apr 9, 2019Updated 7 years ago
Alternatives and similar repositories for plottree
Users that are interested in plottree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated 2 years ago
- 🍗⭐ In silico Legionella pneumophila Sequence Based Typing☆13Feb 8, 2026Updated 9 months ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆13Feb 20, 2026Updated 8 months ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆20Jun 26, 2022Updated 4 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 10 months ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- ☆16May 21, 2026Updated 5 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated 2 months ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Oct 28, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆21Sep 9, 2026Updated 2 months ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- ☆20Jan 23, 2019Updated 7 years ago
- Investigating the gut virus communities associated with colon cancer.☆11Sep 20, 2020Updated 6 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- ☆29Nov 2, 2026Updated last week
- Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017☆12Dec 27, 2017Updated 8 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 9 months ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 8 months ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- Lineage-aware Kraken2 refinement for long-read metagenomics☆20Updated this week
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Jun 11, 2024Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Oct 27, 2026Updated 2 weeks ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆18Mar 18, 2025Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 6 months ago
- Plasmid analysis using rearrangement distances☆56Oct 30, 2026Updated 2 weeks ago
- Course repository for Methods in Biodiversity Analysis☆25Jun 6, 2025Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 11 months ago
Are these results useful?