JinLi711 / UTGNLinks
Universal Transforming Geometric Network for protein structure prediction.
☆8Updated 5 years ago
Alternatives and similar repositories for UTGN
Users that are interested in UTGN are comparing it to the libraries listed below
Sorting:
- ☆36Updated 6 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- ☆25Updated 3 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- ☆34Updated 4 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- ☆21Updated 5 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- Learning protein structure with a differentiable simulator☆27Updated 6 years ago
- Predicting protein structure through sequence modeling☆111Updated 5 years ago
- Energy-based models for atomic-resolution protein conformations☆99Updated 3 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- ☆31Updated 7 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- ☆18Updated 7 years ago
- Semantic Segmentor for Protein Structures.☆11Updated 3 years ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated 2 years ago
- A Deep-learning based dOcking decoy eValuation mEthod☆57Updated 2 years ago