som-shahlab / femr
FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records
☆140Updated 2 weeks ago
Alternatives and similar repositories for femr:
Users that are interested in femr are comparing it to the libraries listed below
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆58Updated this week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆164Updated 2 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated 2 weeks ago
- ☆65Updated last month
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆32Updated this week
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated 3 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated last month
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆67Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆118Updated last year
- A simple set of MEDS polars-based ETL and transformation functions☆30Updated 2 weeks ago
- A customizable pipeline for data extraction from MIMIC-IV.☆222Updated last year
- ☆21Updated this week
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- source codes based on PyTorch to analyze EHR☆136Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆81Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆112Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year
- ☆34Updated last year
- General Healthcare Predictive Framework☆17Updated last month
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆283Updated last year
- OMOP standardization pipeline for ICU databases☆40Updated 2 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 8 months ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆16Updated this week
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆175Updated 3 months ago