Alternatives and similar repositories for MEDS-DEV:

Users that are interested in MEDS-DEV are comparing it to the libraries listed below

• mmcdermott / MEDS_transforms
  A simple set of MEDS polars-based ETL and transformation functions
  ☆28Updated last week
• mmcdermott / MEDS_Tabular_AutoML
  Limited automatic tabular ML pipelines for generic MEDS datasets.
  ☆14Updated 3 weeks ago
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆30Updated last week
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆47Updated this week
• som-shahlab / meds_reader
  ☆17Updated 2 months ago
• mmcdermott / MIMICIV_FMs_public
  Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
  ☆14Updated last year
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆27Updated last week
• Oufattole / meds-torch
  ☆20Updated this week
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆34Updated this week
• ipolharvard / ethos-paper
  ☆65Updated this week
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆129Updated last week
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆111Updated 6 months ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆157Updated 3 weeks ago
• Jwoo5 / integrated-ehr-pipeline
  ☆14Updated 7 months ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆63Updated 2 weeks ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆92Updated 9 months ago
• mmcdermott / AUC_is_all_you_need
  Analyzing different ML model comparison metrics
  ☆14Updated last year
• MLD3 / FIDDLE-experiments
  Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139
  ☆24Updated 2 years ago
• whaleloops / TransformEHR
  ☆33Updated last year
• hoon9405 / GenHPF
  General Healthcare Predictive Framework
  ☆14Updated this week
• soda-inria / causal_ehr_mimic
  Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how
  ☆15Updated last year
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆115Updated last year
• healthylaife / MIMIC-IV-Data-Pipeline
  A customizable pipeline for data extraction from MIMIC-IV.
  ☆207Updated last year
• mmcdermott / comprehensive_MTL_EHR
  Source code for a comprehensive analysis of MTL over EHR timeseries data.
  ☆37Updated last year
• AI4HealthUOL / MDS-ED
  Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.
  ☆14Updated 5 months ago
• ji-youn-kim / EHRNoteQA
  [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"
  ☆29Updated 2 months ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆55Updated last year
• stefanhgm / patient_summaries_with_llms
  Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"
  ☆13Updated 6 months ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆109Updated last year