som-shahlab / meds_readerLinks
A high-performance database and Python reader interface for MEDS datasets
☆19Updated 2 weeks ago
Alternatives and similar repositories for meds_reader
Users that are interested in meds_reader are comparing it to the libraries listed below
Sorting:
- A simple set of MEDS polars-based ETL and transformation functions☆35Updated 3 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆29Updated last week
- ☆25Updated 4 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆36Updated 2 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆85Updated 2 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆37Updated 3 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 4 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 3 months ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 2 months ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated 3 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆86Updated 3 years ago
- Training HuggingFace models on EHR data☆30Updated 3 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆80Updated last week
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- ☆14Updated last year
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆16Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated last week
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Resources for Machine Learning Explainability☆86Updated last year
- Consolidate all problem sets into one repo☆16Updated 7 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆186Updated last week
- ☆22Updated 3 years ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆79Updated 6 months ago
- ☆31Updated 2 years ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- REMed: Retrieval-Enhanced Medical prediction model☆21Updated 9 months ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆122Updated last year