Alternatives and similar repositories for meds_reader

Users that are interested in meds_reader are comparing it to the libraries listed below

• mmcdermott / MEDS_transforms
  A simple set of MEDS polars-based ETL and transformation functions
  ☆33Updated 2 months ago
• Oufattole / meds-torch
  ☆24Updated 3 months ago
• Medical-Event-Data-Standard / MEDS-DEV
  The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
  ☆29Updated 3 months ago
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆33Updated last month
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆75Updated last month
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆36Updated 3 months ago
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆115Updated 2 months ago
• mmcdermott / MEDS_Tabular_AutoML
  Limited automatic tabular ML pipelines for generic MEDS datasets.
  ☆18Updated last month
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆96Updated 2 months ago
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆84Updated 2 years ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆38Updated last week
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆114Updated 2 years ago
• mmcdermott / comprehensive_MTL_EHR
  Source code for a comprehensive analysis of MTL over EHR timeseries data.
  ☆37Updated 2 years ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆75Updated last week
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆20Updated 2 years ago
• Jwoo5 / integrated-ehr-pipeline
  ☆14Updated last year
• btheodorou99 / HALO_Inpatient
  ☆29Updated 7 months ago
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆29Updated last month
• MLD3 / FIDDLE-experiments
  Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139
  ☆25Updated 3 years ago
• vanderschaarlab / clairvoyance
  Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series
  ☆132Updated 3 years ago
• yy6linda / synthetic-ehr-benchmarking
  ☆32Updated 2 years ago
• deepmedicine / Targeted-BEHRT
  Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
  ☆20Updated 2 years ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆155Updated this week
• hoon9405 / GenHPF
  General Healthcare Predictive Framework
  ☆17Updated 6 months ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆190Updated 3 months ago
• mmcdermott / MIMICIV_FMs_public
  Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
  ☆16Updated last year
• healthylaife / MIMIC-IV-Data-Pipeline
  A customizable pipeline for data extraction from MIMIC-IV.
  ☆260Updated last month
• ipolharvard / ethos-paper
  ☆76Updated 6 months ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆147Updated last year
• vanderschaarlab / temporai
  TemporAI: ML-centric Toolkit for Medical Time Series
  ☆119Updated last year