Alternatives and similar repositories for ehr_ml

Users that are interested in ehr_ml are comparing it to the libraries listed below

• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆94Updated last year
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆142Updated last year
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated 2 years ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆111Updated 2 years ago
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆20Updated 2 years ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆35Updated last month
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆62Updated last month
• deepmedicine / Targeted-BEHRT
  Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
  ☆20Updated 2 years ago
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆31Updated 3 weeks ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆63Updated last week
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆29Updated last year
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆26Updated 3 weeks ago
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆33Updated 3 weeks ago
• AtlasCUMC / ICD10-ICD9-codes-conversion
  ☆39Updated last year
• Yuqi92 / deep-patient-representation-mimiciii-multitask
  Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
  ☆32Updated 5 years ago
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆19Updated 2 years ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆144Updated this week
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆45Updated last year
• emnlp-mimic / mimic
  ☆22Updated 3 years ago
• Oufattole / meds-torch
  ☆22Updated 2 weeks ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆80Updated 2 weeks ago
• kaggarwal / ClinicalNotesICU
  ☆25Updated 5 years ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆72Updated this week
• mmcdermott / comprehensive_MTL_EHR
  Source code for a comprehensive analysis of MTL over EHR timeseries data.
  ☆37Updated 2 years ago
• luoyuanlab / Clinical-Longformer
  ☆61Updated last year
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆37Updated 4 years ago
• som-shahlab / motor_tutorial
  Tutorial repository for the official MOTOR release
  ☆14Updated 4 months ago