Code for doing machine learning with various EHRs
☆22Mar 1, 2023Updated 3 years ago
Alternatives and similar repositories for ehr_ml
Users that are interested in ehr_ml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Weak supervision methods for extracting real world evidence from EHRs☆35Apr 7, 2020Updated 6 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆180Jul 13, 2026Updated 3 weeks ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Mar 8, 2023Updated 3 years ago
- The repository for the paper "Predicting in-hospital mortality by combining clinical notes with time-series data"☆12May 23, 2021Updated 5 years ago
- A collection of DPP code and other diverse sampling algorithms☆10Nov 12, 2014Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Oct 22, 2021Updated 4 years ago
- Clinical data fusion☆33May 9, 2022Updated 4 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆129Apr 6, 2023Updated 3 years ago
- ☆11Jul 31, 2020Updated 6 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆231Jun 6, 2025Updated last year
- To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical re…☆11Jul 30, 2025Updated last year
- Code and webpages for our study on teaching humans to defer to an AI☆12Nov 6, 2023Updated 2 years ago
- Determinantal point processes for basket recommendations☆16Jan 15, 2019Updated 7 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆33Jun 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Course material for Enrichment analysis course by SIB☆13Feb 2, 2026Updated 6 months ago
- GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.☆10Oct 20, 2023Updated 2 years ago
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Apr 14, 2026Updated 3 months ago
- Jupyter notebooks for teaching Python for Data Science. Used by our Girls Who Code Club & Summer Experience.☆14Oct 13, 2025Updated 9 months ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Jun 26, 2024Updated 2 years ago
- Machine Learning for Survival Analysis: A Survey☆11Nov 11, 2020Updated 5 years ago
- obesity challenge☆13May 12, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Sep 8, 2017Updated 8 years ago
- python code for BRLTM model☆14Jan 17, 2021Updated 5 years ago
- Pytorch implementation of Med2Vec.☆11Apr 26, 2024Updated 2 years ago
- ☆10Nov 15, 2015Updated 10 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆107Nov 27, 2018Updated 7 years ago
- Code for the paper "Knowledge Base Completion for Constructing Problem-Oriented Medical Records" at MLHC 2020☆11Jun 8, 2021Updated 5 years ago
- ☆11Jan 12, 2022Updated 4 years ago
- ACM CHIL 2020: "Survival Cluster Analysis"☆18Jan 26, 2021Updated 5 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆49Dec 9, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- EHR2Vec is a embedding translation tool for medical entities based on attention mechanism. We have provided a version of tensorflow imple…☆12Nov 14, 2020Updated 5 years ago
- ☆16Aug 28, 2020Updated 5 years ago
- Keyword Extraction and Analysis Pipeline & Application with KeyBERT and Taipy☆16Apr 18, 2023Updated 3 years ago
- Implementation of the paper "Direct Optimization through argmax for discrete Variational Auto-Encoder"☆15Sep 15, 2020Updated 5 years ago
- Code for co-training large language models (e.g. T0) with smaller ones (e.g. BERT) to boost few-shot performance☆16Sep 23, 2022Updated 3 years ago
- Code for "Classifying Unstructured Clinical Notes via Automatic Weak Supervision", MLHC 2022.☆16Mar 10, 2023Updated 3 years ago
- Reproducing feature engineering & oversampling experiments on TPEHG DB and assessing the real impact of over-sampling☆17Jan 19, 2020Updated 6 years ago