som-shahlab / ehr_ml
Code for doing machine learning with various EHRs
☆21Updated 2 years ago
Alternatives and similar repositories for ehr_ml:
Users that are interested in ehr_ml are comparing it to the libraries listed below
- ☆39Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 9 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆36Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆50Updated 2 weeks ago
- source codes based on PyTorch to analyze EHR☆135Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last week
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆30Updated last week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆136Updated 2 weeks ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 11 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆57Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆111Updated last year
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- Patient Code & Text Representation Learning☆20Updated last year
- Repository for the HiRID ICU Benchmark (HiB) project☆52Updated last year
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆31Updated 2 years ago
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆21Updated 2 weeks ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆66Updated last month
- OMOP standardization pipeline for ICU databases☆40Updated last month
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- ☆59Updated last year
- ☆101Updated 3 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated last year