A collection of ETLs from common data formats to Medical Event Data Standard
☆42Aug 5, 2025Updated 11 months ago
Alternatives and similar repositories for meds_etl
Users that are interested in meds_etl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆178May 25, 2026Updated last month
- A high-performance database and Python reader interface for MEDS datasets☆20Jan 26, 2026Updated 5 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆41Apr 27, 2026Updated 2 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆40May 14, 2026Updated last month
- General Healthcare Predictive Framework☆24Dec 6, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆46Jun 4, 2026Updated last month
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆226Jun 6, 2025Updated last year
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆117Jul 2, 2025Updated last year
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆19Apr 14, 2026Updated 2 months ago
- Official repository of "EHR-SeqSQL : A Sequential Text-to-SQL Dataset For Interactively Exploring Electronic Health Records" (ACL 2024 Fi…☆17Jul 5, 2024Updated 2 years ago
- ☆14Aug 9, 2024Updated last year
- Training HuggingFace models on EHR data☆52Nov 2, 2025Updated 8 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆47Dec 9, 2025Updated 7 months ago
- A collection of resources and information for concrete skills that are helpful when pursuing a PhD in computer science (specifically in M…☆23Apr 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆17Jul 20, 2025Updated 11 months ago
- Source implementation and pointer to pre-trained models for Chexpert++, a BERT-based approximation to CheXpert for radiology report label…☆20Jul 3, 2020Updated 6 years ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Nov 16, 2023Updated 2 years ago
- DiReCT: Diagnostic Reasoning for Clinical Notes via Large Language Models (NeurIPS 2024 D&B Track)☆24Mar 6, 2025Updated last year
- Repository for the paper 'Enhancing Clinical Decision Support with Physiological Waveforms — A Multimodal Benchmark in Emergency Care'.☆27Apr 30, 2025Updated last year
- ☆93Mar 8, 2025Updated last year
- PyTorch extension for handling deeply nested sequences of variable length☆15Mar 19, 2026Updated 3 months ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Jun 18, 2024Updated 2 years ago
- Verifying Facts in LLM-Generated Clinical Text with Electronic Health Records☆36Jan 2, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- REMed: Retrieval-Enhanced Medical prediction model☆24Jan 8, 2025Updated last year
- ☆19May 5, 2026Updated 2 months ago
- Zero-shot clinical trial matching with LLMs☆19Mar 1, 2025Updated last year
- [NeurIPS 2025] This is the official repository for "RAD: Towards Trustworthy Retrieval-Augmented Multi-modal Clinical Diagnosis"☆27Nov 21, 2025Updated 7 months ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Apr 11, 2023Updated 3 years ago
- ☆11Nov 3, 2023Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆92Jun 26, 2026Updated last week
- ☆24Sep 25, 2020Updated 5 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆76Jun 17, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆51Oct 25, 2023Updated 2 years ago
- Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records☆30Aug 21, 2024Updated last year
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆110Apr 28, 2026Updated 2 months ago
- "How to Trust Your Diffusion Models: A Convex Optimization Approach to Conformal Risk Control"☆17Jan 6, 2026Updated 6 months ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Nov 8, 2023Updated 2 years ago
- ☆58Oct 2, 2025Updated 9 months ago
- Med-BERT, contextualized embedding model for structured EHR data☆331Feb 19, 2024Updated 2 years ago