Medical-Event-Data-Standard / meds_etlLinks
A collection of ETLs from common data formats to Medical Event Data Standard
☆31Updated 2 weeks ago
Alternatives and similar repositories for meds_etl
Users that are interested in meds_etl are comparing it to the libraries listed below
Sorting:
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated 2 weeks ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated 3 weeks ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 2 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week
- ☆21Updated 2 weeks ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- Training HuggingFace models on EHR data☆26Updated 3 weeks ago
- ☆72Updated 3 months ago
- General Healthcare Predictive Framework☆17Updated 3 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆176Updated 2 weeks ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆17Updated 2 weeks ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆113Updated 3 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- ☆19Updated last month
- OMOP standardization pipeline for ICU databases☆42Updated 4 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- REMed: Retrieval-Enhanced Medical prediction model☆19Updated 5 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆123Updated 2 years ago
- ☆14Updated 10 months ago
- ☆31Updated 2 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆140Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago