mmcdermott / MEDS_transformsLinks
A simple set of MEDS polars-based ETL and transformation functions
☆33Updated this week
Alternatives and similar repositories for MEDS_transforms
Users that are interested in MEDS_transforms are comparing it to the libraries listed below
Sorting:
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated last week
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆17Updated last month
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆66Updated 2 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated last month
- A high-performance database and Python reader interface for MEDS datasets☆19Updated 2 weeks ago
- ☆22Updated last month
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆113Updated 2 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆145Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last month
- Training HuggingFace models on EHR data☆27Updated 2 weeks ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆16Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆178Updated last month
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- General Healthcare Predictive Framework☆17Updated 4 months ago
- ☆72Updated 4 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 weeks ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- A customizable pipeline for data extraction from MIMIC-IV.☆241Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139