Alternatives and similar repositories for MEDS_transforms:

Users that are interested in MEDS_transforms are comparing it to the libraries listed below

• Medical-Event-Data-Standard / MEDS-DEV
  The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
  ☆24Updated 3 weeks ago
• mmcdermott / MEDS_Tabular_AutoML
  Limited automatic tabular ML pipelines for generic MEDS datasets.
  ☆15Updated last month
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆29Updated last week
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆50Updated 2 weeks ago
• som-shahlab / meds_reader
  ☆18Updated 3 months ago
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆30Updated last week
• Oufattole / meds-torch
  ☆20Updated last week
• mmcdermott / MIMICIV_FMs_public
  Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
  ☆16Updated last year
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆111Updated 2 weeks ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆36Updated last week
• ipolharvard / ethos-paper
  ☆65Updated 3 weeks ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆92Updated 9 months ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆136Updated 2 weeks ago
• hoon9405 / GenHPF
  General Healthcare Predictive Framework
  ☆16Updated 3 weeks ago
• som-shahlab / hf_ehr
  Taking off-the-shelf HuggingFace models and training them on EHR data
  ☆16Updated 3 weeks ago
• Jwoo5 / integrated-ehr-pipeline
  ☆14Updated 7 months ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆66Updated last month
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆57Updated last year
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆161Updated last month
• USM-CHU-FGuyon / BlendedICU
  OMOP standardization pipeline for ICU databases
  ☆40Updated last month
• btheodorou99 / HALO_Inpatient
  ☆22Updated 2 months ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆109Updated last year
• ratschlab / HIRID-ICU-Benchmark
  Repository for the HiRID ICU Benchmark (HiB) project
  ☆52Updated last year
• ratschlab / circEWS
  circEWS public code
  ☆67Updated 5 months ago
• mmcdermott / comprehensive_MTL_EHR
  Source code for a comprehensive analysis of MTL over EHR timeseries data.
  ☆37Updated last year
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆78Updated 2 years ago
• MLD3 / FIDDLE-experiments
  Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139
  ☆24Updated 2 years ago
• starmpcc / REMed
  REMed: Retrieval-Enhanced Medical prediction model
  ☆17Updated 2 months ago
• soda-inria / causal_ehr_mimic
  Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how
  ☆17Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week