A simple set of MEDS polars-based ETL and transformation functions
☆40Nov 20, 2025Updated 3 months ago
Alternatives and similar repositories for MEDS_transforms
Users that are interested in MEDS_transforms are comparing it to the libraries listed below
Sorting:
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Aug 8, 2025Updated 6 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆36Nov 20, 2025Updated 3 months ago
- A high-performance database and Python reader interface for MEDS datasets☆20Jan 26, 2026Updated last month
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆40Feb 20, 2026Updated last week
- ☆29Jun 8, 2025Updated 8 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆39Aug 5, 2025Updated 6 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆101Nov 5, 2025Updated 3 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Jul 2, 2025Updated 8 months ago
- General Healthcare Predictive Framework☆23Dec 6, 2025Updated 2 months ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆17Jan 3, 2024Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Dec 9, 2025Updated 2 months ago
- Training HuggingFace models on EHR data☆41Nov 2, 2025Updated 4 months ago
- Analyzing different ML model comparison metrics☆17Jan 20, 2024Updated 2 years ago
- [npj Digital Medicine 2025] Multiple Embedding Model for EHR (MEME) used for strong prediction on Emergency Department tasks☆20Jul 8, 2025Updated 7 months ago
- Verifying Facts in LLM-Generated Clinical Text with Electronic Health Records☆26Jan 2, 2026Updated 2 months ago
- ☆85Mar 8, 2025Updated 11 months ago
- REMed: Retrieval-Enhanced Medical prediction model☆23Jan 8, 2025Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆162Feb 23, 2026Updated last week
- A collection of resources and information for concrete skills that are helpful when pursuing a PhD in computer science (specifically in M…☆24Apr 18, 2023Updated 2 years ago
- An updated version of eICU Benchmark with an updated problem definition on LoS and Decompensation tasks☆11Aug 12, 2021Updated 4 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Jun 17, 2025Updated 8 months ago
- PyTorch extension for handling deeply nested sequences of variable length☆13Feb 25, 2026Updated last week
- Codebase for "Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series"☆13Nov 1, 2020Updated 5 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆210Jun 6, 2025Updated 8 months ago
- MetricEval: A framework that conceptualizes and operationalizes four main components of metric evaluation, in terms of reliability and va…☆12Nov 6, 2023Updated 2 years ago
- Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs☆14Feb 10, 2026Updated 3 weeks ago
- Interpreting Chest X-rays Like a Radiologist: A Benchmark with Clinical Reasoning, release the dataset and the model weight☆13May 26, 2025Updated 9 months ago
- ☆29Aug 3, 2021Updated 4 years ago
- ☆14Aug 9, 2024Updated last year
- ☆14Jul 13, 2022Updated 3 years ago
- ☆19Jul 30, 2024Updated last year
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆17Jul 20, 2025Updated 7 months ago
- Code release for "TempLM: Distilling Language Models into Template-Based Generators"☆14Jul 21, 2022Updated 3 years ago
- ☆18Oct 13, 2022Updated 3 years ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆58Sep 10, 2025Updated 5 months ago
- 🏥 ICU data with R 🏥☆57Sep 3, 2025Updated 6 months ago
- A metric suite leveraging the logical inference capabilities of LLMs, for radiology report generation both with and without grounding☆92Jan 16, 2026Updated last month
- DescEmb - Unifying Heterogenous Electronic Health Records Systems via Text-Based Code Embedding☆22Apr 29, 2025Updated 10 months ago
- A version of MIMIC-IV in FHIR☆53Oct 28, 2024Updated last year