mmcdermott / MEDS_transformsLinks
A simple set of MEDS polars-based ETL and transformation functions
☆38Updated 2 weeks ago
Alternatives and similar repositories for MEDS_transforms
Users that are interested in MEDS_transforms are comparing it to the libraries listed below
Sorting:
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆33Updated 2 weeks ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 4 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆90Updated last month
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 4 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆38Updated 2 months ago
- A high-performance database and Python reader interface for MEDS datasets☆19Updated last month
- General Healthcare Predictive Framework☆22Updated last week
- ☆27Updated 6 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 5 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆42Updated 2 months ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆16Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆159Updated last week
- Training HuggingFace models on EHR data☆35Updated last month
- ☆80Updated 9 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 5 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆202Updated 6 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆86Updated this week
- TemporAI: ML-centric Toolkit for Medical Time Series☆126Updated last year
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- ☆35Updated 2 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆66Updated 5 months ago
- ☆14Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆140Updated 3 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆191Updated last month
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series☆132Updated 3 years ago
- circEWS public code☆74Updated last year