deepmedicine / BEHRTView external linksLinks
Code for BEHRT: Transformer for Electronic Health Records
☆120Apr 6, 2023Updated 2 years ago
Alternatives and similar repositories for BEHRT
Users that are interested in BEHRT are comparing it to the libraries listed below
Sorting:
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Mar 8, 2023Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆149Jan 22, 2024Updated 2 years ago
- python code for BRLTM model☆14Jan 17, 2021Updated 5 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Dec 9, 2025Updated 2 months ago
- ☆39Feb 14, 2020Updated 5 years ago
- A customizable pipeline for multimodal data extraction from MIMIC-IV!☆294Feb 4, 2026Updated last week
- Code for doing machine learning with various EHRs☆22Mar 1, 2023Updated 2 years ago
- Pre-training of Graph Augmented Transformers for Medication Recommendation☆126Jun 15, 2019Updated 6 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆208Jun 6, 2025Updated 8 months ago
- ☆22Jul 20, 2022Updated 3 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Jul 26, 2019Updated 6 years ago
- code for ehrMGAN☆23Feb 21, 2023Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Jun 25, 2025Updated 7 months ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆426Oct 7, 2022Updated 3 years ago
- ☆107Aug 18, 2021Updated 4 years ago
- ☆21Dec 14, 2021Updated 4 years ago
- ☆229Sep 1, 2021Updated 4 years ago
- ☆47Oct 25, 2023Updated 2 years ago
- Training HuggingFace models on EHR data☆40Nov 2, 2025Updated 3 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Jul 12, 2022Updated 3 years ago
- ☆32Jan 28, 2025Updated last year
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆434Oct 17, 2022Updated 3 years ago
- ☆27Dec 31, 2019Updated 6 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Jun 17, 2025Updated 7 months ago
- ☆15Aug 28, 2020Updated 5 years ago
- ☆40Feb 17, 2022Updated 3 years ago
- Dual Adversarial Autoencoder for Generating Set-valued Sequences☆19Jan 15, 2021Updated 5 years ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆36Jul 26, 2022Updated 3 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆108Nov 27, 2018Updated 7 years ago
- ☆30Aug 7, 2017Updated 8 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆59Jul 13, 2023Updated 2 years ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆22Nov 10, 2023Updated 2 years ago
- Ward2ICU: A Vital Signs Dataset of Inpatients from the General Ward☆32Oct 25, 2019Updated 6 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Jan 19, 2026Updated 3 weeks ago
- ☆55Apr 9, 2020Updated 5 years ago
- The repository for the paper "Predicting in-hospital mortality by combining clinical notes with time-series data"☆12May 23, 2021Updated 4 years ago
- ☆10Nov 7, 2022Updated 3 years ago
- Predicting ICD Codes from Clinical Notes☆64Sep 11, 2020Updated 5 years ago