som-shahlab / hf_ehrLinks
Training HuggingFace models on EHR data
☆26Updated 3 weeks ago
Alternatives and similar repositories for hf_ehr
Users that are interested in hf_ehr are comparing it to the libraries listed below
Sorting:
- ☆72Updated 3 months ago
- ☆39Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 2 weeks ago
- Code repository to create the MIMIC-CDM Dataset.☆34Updated 4 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆123Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 2 weeks ago
- Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.☆19Updated last month
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆38Updated 4 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated 3 weeks ago
- ☆34Updated 2 years ago
- ☆14Updated 10 months ago
- ☆21Updated 2 weeks ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆36Updated 6 months ago
- REMed: Retrieval-Enhanced Medical prediction model☆19Updated 5 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"☆32Updated 5 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated 2 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆17Updated 2 weeks ago
- ☆81Updated 2 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated last year
- Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records☆22Updated 10 months ago
- INSPECT dataset/benchmark paper, accepted by NeurIPS 2023☆33Updated last month
- ☆26Updated 4 months ago
- General Healthcare Predictive Framework☆17Updated 3 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆113Updated 3 months ago
- Code repository to analyse the performance and results of selected LLMs using the MIMIC CDM dataset.☆19Updated 4 months ago