justin13601 / ACES
[ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
☆32Updated 3 weeks ago
Alternatives and similar repositories for ACES:
Users that are interested in ACES are comparing it to the libraries listed below
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆50Updated this week
- A simple set of MEDS polars-based ETL and transformation functions☆29Updated this week
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last week
- ☆21Updated this week
- Taking off-the-shelf HuggingFace models and training them on EHR data☆20Updated last month
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆15Updated 2 months ago
- ☆65Updated last month
- ☆18Updated 4 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆111Updated 3 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆137Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Repository for the HiRID ICU Benchmark (HiB) project☆53Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆66Updated 2 weeks ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆17Updated last year
- ☆14Updated 8 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆78Updated 2 years ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆16Updated last year
- General Healthcare Predictive Framework☆16Updated last month
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆117Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆162Updated 2 months ago
- circEWS public code☆68Updated 5 months ago
- OMOP standardization pipeline for ICU databases☆40Updated last month
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- Patient Code & Text Representation Learning☆20Updated last year
- ☆33Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆112Updated last year