justin13601 / ACESLinks
[ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
☆37Updated 3 weeks ago
Alternatives and similar repositories for ACES
Users that are interested in ACES are comparing it to the libraries listed below
Sorting:
- A simple set of MEDS polars-based ETL and transformation functions☆35Updated 3 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆29Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆85Updated 2 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆36Updated 2 months ago
- Training HuggingFace models on EHR data☆30Updated 3 months ago
- ☆25Updated 4 months ago
- ☆78Updated 7 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 3 months ago
- A high-performance database and Python reader interface for MEDS datasets☆19Updated last week
- A customizable pipeline for data extraction from MIMIC-IV; now multimodal!☆267Updated 2 weeks ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆19Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated 3 weeks ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆196Updated 4 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆79Updated last week
- ☆14Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 4 months ago
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 2 months ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆186Updated last week
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆135Updated last month
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆86Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 4 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- ☆43Updated 2 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆118Updated 2 years ago